General Information
Chemical Information*
Cannabinoid and Terpenoid information provided by our Partner Labs.
CANNABINOIDS
THC + THCA %: 26.872
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A
TERPENOIDS
- α-Bisabolol %: 0.014
Borneol %: N/A
Camphene %: 0.018
Carene %: ND
Caryophyllene oxide %: N/A
β-Carophyllene %: 0.187
Fenchol %: N/A
Geraniol %: ND
α-Humulene %: 0.081
Limonene %: 0.18
Linalool %: 0.044
-
Myrcene %: 0.0395
α-Phellandrene %: N/A
Terpinolene %: 0.0045
α-Terpineol %: N/A
α-Terpinene %: ND
γ-Terpinene %: ND
Total Nerolidol %: ND
Total Ocimene %: ND
α-Pinene %: 0.0449
β-Pinene %: 0.0847
Genetic Information
View this strain on the Phylotree
Percent Heterozygosity: 0.86
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I
Percent Heterozygosity: 0.86
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I
CBCAS COVERAGE ![]() What does this visualization mean? |
Y-RATIO DISTRIBUTION ![]() What does this visualization mean? |
VARIANTS (THCAS, CBDAS, and CBCAS)
Gene | HGVS.c | HGVS.p | Annotation | Annotation Impact | Contig | Contig Pos | Ref/Alt | Var Freq |
---|
VARIANTS (SELECT GENES OF INTEREST)
Gene | HGVS.c | HGVS.p | Annotation | Annotation Impact | Contig | Contig Pos | Ref/Alt | Var Freq | |
---|---|---|---|---|---|---|---|---|---|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | MODERATE | contig700 | 1945567 | A/T | NGS:0.825 C90:0.904 | 0.825 |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | MODERATE | contig700 | 1945603 | T/A | NGS:0.763 C90:0.876 | 0.763 |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | MODERATE | contig700 | 1951851 | T/A | NGS:0.844 C90:0.880 | 0.844 |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | MODERATE | contig700 | 2721177 | T/C | NGS:0.651 C90:0.684 | 0.651 |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | HIGH | contig700 | 2721183 | CA/C | NGS:0.792 C90:0.761 | 0.792 |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | MODERATE | contig700 | 2721188 | T/C | NGS:0.643 C90:0.301 | 0.643 |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | MODERATE | contig700 | 2721242 | A/C | NGS:0.575 C90:0.679 | 0.575 |
aPT1 | c.406A>G | p.Ile136Val | missense variant | MODERATE | contig121 | 2839605 | A/G | NGS:0.579 C90:0.761 | 0.579 |
HDS-2 | c.42delC | p.Asp15fs | frameshift variant | HIGH | contig95 | 1989707 | AC/A | NGS:0.002 C90:0.000 | 0.002 |
NEAREST GENETIC RELATIVES TO East Coast Sour Diesel:
# | Relative | Genetic Distance |
---|---|---|
1 | RSP11225-New York City Deisel | 0.19 | 2 | RSP11343-Sour D | 0.2 | 3 | RSP11093-RKM-2018-002 | 3.59 | 4 | RSP11191-Super Sour Diesel | 4.89 | 5 | RSP11352-Star Dawg | 4.92 | 6 | RSP11095-RKM-2018-004 | 5.01 | 7 | RSP11096-RKM-2018-005 | 5.07 | 8 | RSP11109-RKM-2018-017 | 5.36 | 9 | RSP11124-RKM-2018-032 | 5.4 | 10 | RSP11113-RKM-2018-021 | 5.46 | 11 | RSP11265-Pure Power Plant | 5.53 | 12 | RSP11185-Chem 91 | 5.57 | 13 | RSP11241-501st OG | 5.72 | 14 | RSP11049-Hermaphrodite Research Sample1 | 5.85 | 15 | RSP11103-RKM-2018-012 | 5.85 | 16 | RSP11042-Hermaphrodite Research Sample1 | 5.92 | 17 | RSP10684-Blueberry Cheesecake | 5.98 | 18 | RSP11353-Rugburn OG | 6.01 | 19 | RSP11362-NSPM1 | 6.04 | 20 | RSP11363-Whitey | 6.07 |
NEAREST GENETIC RELATIVES TO BASE TREE:
# | Relative | Genetic Distance |
---|---|---|
1 | RSP11093-RKM-2018-002 | 3.58 | 2 | RSP11096-RKM-2018-005 | 5.08 | 3 | RSP11124-RKM-2018-032 | 5.73 | 4 | RSP11049-Hermaphrodite Research Sample1 | 5.92 | 5 | RSP10684-Blueberry Cheesecake | 6.22 | 6 | RSP11048-Gold Cracker | 6.84 | 7 | RSP11110-RKM-2018-018 | 6.99 | 8 | RSP11014-Durban Poison | 7.26 | 9 | RSP11125-RKM-2018-033 | 7.35 | 10 | RSP10837-Skywalker OG | 7.61 | 11 | RSP11073-Pie Hoe | 7.63 | 12 | RSP11000-Liberty Haze | 7.74 | 13 | RSP11094-RKM-2018-003 | 7.8 | 14 | RSP10991-Golden Goat 2 | 7.86 | 15 | RSP11121-RKM-2018-029 | 7.94 | 16 | RSP11126-RKM-2018-034 | 7.94 | 17 | RSP10988-The Gift | 8.07 | 18 | RSP10551-Sour Raspberry | 8.16 | 19 | RSP11112-RKM-2018-020 | 8.17 | 20 | RSP11050-Hermaphrodite ResearchSample2 | 8.21 |
MOST GENETICALLY DISTANT STRAINS FROM East Coast Sour Diesel:
# | Strain | Genetic Distance |
---|---|---|
1 | RSP11314-Cherry Blossom | 14.06 | 2 | RSP11301-Cherry Blossom | 13.88 | 3 | RSP11268-Unknown- Cherry Wine - 001 | 13.83 | 4 | RSP11323-Cherry Blossom | 13.38 | 5 | RSP11133-Cbot-2019-005 | 13.26 | 6 | RSP11311-Cherry Blossom | 13.25 | 7 | RSP11333-Cherry Blossom | 13.11 | 8 | RSP11328-Cherry Blossom | 13.1 | 9 | RSP11334-Cherry Blossom | 13.09 | 10 | RSP11317-Cherry Blossom | 13.06 | 11 | RSP11318-Cherry Blossom | 13.04 | 12 | RSP11309-Cherry Blossom | 13 | 13 | RSP11196-JL 3rd Gen Father | 12.88 | 14 | RSP11306-Cherry Blossom | 12.67 | 15 | RSP11325-Cherry Blossom | 12.61 | 16 | RSP11300-Cherry Blossom | 12.59 | 17 | RSP11324-Cherry Blossom | 12.53 | 18 | RSP11271-Unknown- Cherry Wine - 004 | 12.45 | 19 | RSP11213-80E | 12.43 | 20 | RSP11174-AVIDEKEL 2 0 | 12.42 |
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain | Number of Overlapping SNPs | Concordance |
---|---|---|
SRR4448401 | 116 | 114 |
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain | Number of Overlapping SNPs | Concordance |
---|---|---|
SRR3495204 | 15 | 15 |
Blockchain Registration Information:
Transaction ID: 78fe643a9e9e7e630b4cb5f0f7073b1572868850f979de52add399a8c695c37d
Stamping Certificate: PDF
SHASUM Hash: 3f8c14ca35cf525c687dbf94a1baff1ddd8c93618c677bb533b08b40562b9cce
Stamping Certificate: PDF
SHASUM Hash: 3f8c14ca35cf525c687dbf94a1baff1ddd8c93618c677bb533b08b40562b9cce