Sour Raspberry

RSP10551
StrainSEEK Cannabis Certification Report

Accession Date:

January 6, 2017

General Information

Strain: Sour Raspberry
Sample: RD-1905-SR_06JAN2017
RSP ID: RSP10551
Grower: Sun Simulator Farms
Accession Date: January 6, 2017
Gender: Female
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: 14.94
CBD + CBDA %: 0.057
THCV + THCVA %: 0.061
CBC + CBCA %: 0.194
CBG + CBGA %: 0.28
CBN + CBNA %: 0.091

TERPENOIDS

  • α-Bisabolol %: 0.157
    Borneol %: ND
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: ND
    β-Carophyllene %: 0.31
    Fenchol %: 0.278
    Geraniol %: ND
    α-Humulene %: 0.213
    Limonene %: ND
    Linalool %: 0.408
  • Myrcene %: 0.165
    α-Phellandrene %: ND
    Terpinolene %: 0.146
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: ND
    Total Nerolidol %: 0.443
    Total Ocimene %: 0.122
    α-Pinene %: 0.3
    β-Pinene %: 0.257

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 1.16
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-2b

UNIPROT

c.-5_1delATAATAp.Met1delstart lost&conservative inframe deletionHIGHcontig7001951880

IGV:Start|Jump

ATATTAT/A

NGS:0.007

C90:0.000

0.007
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
HDS-2

UNIPROT

c.127T>Gp.Ser43Alamissense variantMODERATEcontig951989794

IGV:Start|Jump

T/G

NGS:0.721

C90:0.000

0.721


NEAREST GENETIC RELATIVES TO Sour Raspberry:
# Relative Genetic Distance
1 RSP11049-Hermaphrodite Research Sample1 5.99
2 RSP11042-Hermaphrodite Research Sample1 6.13
3 RSP11101-RKM-2018-010 6.13
4 RSP11100-RKM-2018-009 6.43
5 RSP11355-SHERBERT 6.51
6 RSP11228-Bordello 6.56
7 RSP11011-Super Blue Dream 6.68
8 RSP11342-Blue Dream 6.82
9 RSP11120-RKM-2018-028 6.89
10 RSP11009-Blue Dream 6.97
11 RSP10763-Serious Happiness 7.09
12 RSP11010-Blue Dream 7.13
13 RSP11017-Blue Dream 7.16
14 RSP11339-Green Crack 7.18
15 RSP11110-RKM-2018-018 7.27
16 RSP11341-Garlic 7.29
17 RSP11008-Blue Dream 7.3
18 RSP11125-RKM-2018-033 7.34
19 RSP11006-Blue Dream 7.37
20 RSP11122-RKM-2018-030 7.42
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11049-Hermaphrodite Research Sample1 6.08
2 RSP11100-RKM-2018-009 6.43
3 RSP11120-RKM-2018-028 6.96
4 RSP11110-RKM-2018-018 7.12
5 RSP11125-RKM-2018-033 7.48
6 RSP11033-Blue Dream 7.57
7 RSP11050-Hermaphrodite ResearchSample2 7.64
8 RSP11121-RKM-2018-029 7.72
9 RSP10680-Blueberry Cheesecake 7.74
10 RSP11096-RKM-2018-005 7.78
11 RSP10988-The Gift 7.98
12 RSP11124-RKM-2018-032 8.04
13 RSP11034-Italian Kiss 8.24
14 RSP10684-Blueberry Cheesecake 8.39
15 RSP11097-RKM-2018-006 8.41
16 RSP11093-RKM-2018-002 8.44
17 RSP10991-Golden Goat 2 8.48
18 RSP11014-Durban Poison 8.5
19 RSP10837-Skywalker OG 8.52
20 RSP11073-Pie Hoe 8.53
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR4450138 7 5
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495226 7 7

Blockchain Registration Information:

Transaction ID: 4abeffbe2bacaf3d307d96db200fd6418c1db4f060a7186635eb5a0d076cc936
Stamping Certificate: PDF
SHASUM Hash: ee2953acd06f8eee25289689dfddf2fbc23050db5dec3b1c7e678a6d5e44af7b