Blue Dream

RSP11005
StrainSEEK Cannabis Certification Report

Accession Date:

September 18, 2017

General Information

Strain: Blue Dream
Sample: Native Roots_31JAN2017
RSP ID: RSP11005
Grower: Native Roots
Accession Date: September 18, 2017
Gender: Female
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 0.82
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCASc.187A>Cp.Ile63Leumissense variantMODERATEcontig7414417641

IGV:Start|Jump

T/G

NGS:0.059

C90:0.679

0.059



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.948T>Gp.Asp316Glumissense variantMODERATEcontig7001950690

IGV:Start|Jump

A/C

NGS:0.456

C90:0.000

0.456
PKSG-2b

UNIPROT

c.945T>Gp.Ser315Argmissense variantMODERATEcontig7001950693

IGV:Start|Jump

A/C

NGS:0.454

C90:0.000

0.454
PKSG-2b

UNIPROT

c.944G>Ap.Ser315Asnmissense variantMODERATEcontig7001950694

IGV:Start|Jump

C/T

NGS:0.445

C90:0.000

0.445
PKSG-2b

UNIPROT

c.934C>Gp.His312Aspmissense variantMODERATEcontig7001950704

IGV:Start|Jump

G/C

NGS:0.410

C90:0.000

0.41
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-2b

UNIPROT

c.-2_1dupATAstart lost&conservative inframe insertionHIGHcontig7001951880

IGV:Start|Jump

A/ATAT

NGS:0.410

C90:0.000

0.41
aPT4

UNIPROT

c.775delTp.Tyr259fsframeshift variantHIGHcontig1212831380

IGV:Start|Jump

AT/A

NGS:0.224

C90:0.000

0.224
aPT4

UNIPROT

c.1168T>Cp.Tyr390Hismissense variantMODERATEcontig1212833503

IGV:Start|Jump

T/C

NGS:0.546

C90:0.000

0.546
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
aPT1

UNIPROT

c.629C>Tp.Thr210Ilemissense variantMODERATEcontig1212840237

IGV:Start|Jump

C/T

NGS:0.561

C90:0.598

0.561
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
HDS-1

UNIPROT

c.1181C>Ap.Pro394Hismissense variantMODERATEcontig1891886861

IGV:Start|Jump

G/T

NGS:0.002

C90:0.000

0.002


NEAREST GENETIC RELATIVES TO Blue Dream:
# Relative Genetic Distance
1 RSP11008-Blue Dream 0
2 RSP11032-Blue Dream 0
3 RSP11227-Blue Dream 0
4 RSP11342-Blue Dream 0
5 RSP11033-Blue Dream 0.03
6 RSP11031-Snoops Dream 0.04
7 RSP11010-Blue Dream 0.04
8 RSP11012-Blue Dream 0.04
9 RSP11009-Blue Dream 0.05
10 RSP11007-Blue Dream 0.06
11 RSP11003-Snoops Dream 0.08
12 RSP11017-Blue Dream 0.08
13 RSP11011-Super Blue Dream 0.12
14 RSP11006-Blue Dream 0.13
15 RSP11004-Blue Dream 0.16
16 RSP10763-Serious Happiness 4.85
17 RSP10991-Golden Goat 2 5.13
18 RSP10989-UP Sunrise 5.56
19 RSP11243-Doug's Varin 5.71
20 RSP11034-Italian Kiss 5.8
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11033-Blue Dream 0.04
2 RSP10991-Golden Goat 2 4.89
3 RSP10989-UP Sunrise 5.73
4 RSP11034-Italian Kiss 5.92
5 RSP11002-CST 6.42
6 RSP11048-Gold Cracker 6.47
7 RSP11049-Hermaphrodite Research Sample1 6.63
8 RSP11100-RKM-2018-009 6.77
9 RSP11119-RKM-2018-027 6.98
10 RSP11110-RKM-2018-018 7.28
11 RSP11094-RKM-2018-003 7.3
12 RSP11014-Durban Poison 7.4
13 RSP11097-RKM-2018-006 7.47
14 RSP11121-RKM-2018-029 7.6
15 RSP11112-RKM-2018-020 7.64
16 RSP11125-RKM-2018-033 7.77
17 RSP10684-Blueberry Cheesecake 7.82
18 RSP10551-Sour Raspberry 7.88
19 RSP10105-QUEEN JESUS 7.97
20 RSP11115-RKM-2018-023 8.01
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR4448372 119 116

Blockchain Registration Information:

Transaction ID: 495ea82a5472dbff8b6096a2f6446bf222d13a422a0fdfb6ea3c5cf3a805f6ec
Stamping Certificate: PDF
SHASUM Hash: 9d4cd8d1aa09147399c0a1e3740c89ea869359a627cef2bd2c8156c563ec4f47