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Cherry

RSP 11143

Grower: GHA

General Information

Sample Name
VR3B
Accession Date
April 16, 2019
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.83%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0457
male female RSP11143

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
closely related moderately related distantly related
  1. 0.217 Cherry Wine (RSP11145)
  2. 0.223 Otto (RSP11147)
  3. 0.230 13 Cherries (RSP11442)
  4. 0.234 Electra (RSP11366)
  5. 0.236 Chematonic -Cannatonic x Chemdawg- (RSP11394)
  6. 0.236 FL30 7 11 2019 (RSP11361)
  7. 0.238 2nd Gen Cherry (RSP11141)
  8. 0.241 Liberty Haze (RSP11000)
  9. 0.242 Cherry Wine (RSP11305)
  10. 0.242 Cherry Wine (RSP11307)
  11. 0.243 Joy (RSP11380)
  12. 0.249 Cold Weather Stout (RSP11418)
  13. 0.249 SO6 (RSP11452)
  14. 0.249 Midnight 05MAY2017 (RSP10941)
  15. 0.250 Cbot-2019-001 (RSP11129)
  16. 0.251 Ringo s Gift -Katie s Cut- (RSP11624)
  17. 0.252 Durban Poison #1 (RSP11013)
  18. 0.252 Suver Haze (RSP11364)
  19. 0.252 Ringo s Angel (RSP10085)
  20. 0.253 RAPHAEL #4 (RSP11173)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
closely related moderately related distantly related
  1. 0.436 Cherry Blossom (RSP11314)
  2. 0.434 JL yellow (RSP11075)
  3. 0.430 RKM-2018-026 (RSP11118)
  4. 0.428 JL 3rd Gen Mother (RSP11214)
  5. 0.428 Fatso (RSP11741)
  6. 0.423 RKM-2018-012 (RSP11103)
  7. 0.416 Chem 91 (RSP11185)
  8. 0.412 JL 3rd Gen Mother (RSP11197)
  9. 0.411 Absolute OG (RSP11455)
  10. 0.411 GMO (RSP12091)
  11. 0.410 Red Eye OG (RSP11190)
  12. 0.409 GMO x Garlic Breath (RSP12507)
  13. 0.407 Kush Hemp E1 (RSP11128)
  14. 0.407 GMO x Zkittlez #43 (RSP11976)
  15. 0.406 JL 4th Gen 1 (RSP11193)
  16. 0.405 Right Mark (RSP11628)
  17. 0.403 Black Triangle (RSP11638)
  18. 0.403 CHEM4 (RSP12090)
  19. 0.402 Skywalker OG (RSP10837)
  20. 0.402 BagSeed (RSP12501)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346596
Overlapping SNPs:
85
Concordance:
59

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495303
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
62c6ef6ed8d28ab0e46405c889238443fc6c8463419ea072bdf6fb884ba152b3
Stamping Certificate
Download PDF (860.9 KB)
SHASUM Hash
9409aefd6f5437db28158f7a9d77acde0844025906e851921d1d0086c216222d
QR code for RSP11143

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