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RSP 11292

Grower: Yabba Cannaba

General Information

Sample Name
QI8
Accession Date
October 9, 2019
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.03%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0594
male female RSP11292

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
aPT4

UniProt

c.694C>T p.Pro232Ser missense variant moderate contig121 2830972

IGV: Start, Jump

C/T
NGS:
0.002
C90:
0.000
aPT4

UniProt

c.697T>A p.Phe233Ile missense variant moderate contig121 2830975

IGV: Start, Jump

T/A
NGS:
0.002
C90:
0.000
aPT4

UniProt

c.698T>A p.Phe233Tyr missense variant moderate contig121 2830976

IGV: Start, Jump

T/A
NGS:
0.002
C90:
0.000
aPT4

UniProt

c.699T>A p.Phe233Leu missense variant moderate contig121 2830977

IGV: Start, Jump

T/A
NGS:
0.002
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
aPT1

UniProt

c.1016_1019delTTTT p.Val339fs frameshift variant high contig121 2842788

IGV: Start, Jump

GTTTT/G
NGS:
0.002
C90:
0.000
aPT1

UniProt

c.1019_1020insAAAA p.Phe340fs frameshift variant high contig121 2842792

IGV: Start, Jump

T/TAAAA
NGS:
0.002
C90:
0.000
aPT1

UniProt

c.1026A>C p.Ter342Tyrext*? stop lost high contig121 2842799

IGV: Start, Jump

A/C
NGS:
0.002
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
closely related moderately related distantly related
  1. 0.089 Queen Dream CBG (RSP11276)
  2. 0.102 Queen Dream CBG (RSP11279)
  3. 0.120 Queen Dream CBG (RSP11283)
  4. 0.126 Queen Dream CBG (RSP11296)
  5. 0.128 Hot Blonde (RSP11290)
  6. 0.143 Queen Dream CBG (RSP11285)
  7. 0.146 Electra (RSP11366)
  8. 0.148 Queen Dream CBG (RSP11293)
  9. 0.154 Queen Dream CBG (RSP11297)
  10. 0.169 QQD2 (RSP11450)
  11. 0.177 Queen Dream CBG (RSP11275)
  12. 0.180 Queen Dream (RSP11291)
  13. 0.181 FL30 7 11 2019 (RSP11361)
  14. 0.182 Doug s Varin (RSP11243)
  15. 0.184 Queen Dream (RSP11278)
  16. 0.186 Serious Happiness (RSP10763)
  17. 0.187 Liberty Haze (RSP11000)
  18. 0.188 Domnesia (RSP11184)
  19. 0.188 Queen Dream CBG (RSP11294)
  20. 0.189 Queen Dream CBG (RSP11281)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
closely related moderately related distantly related
  1. 0.470 80E (RSP11211)
  2. 0.457 80E (RSP11213)
  3. 0.435 R3in134 (SRR14708220)
  4. 0.434 Tiger Tail -30- (RSP11484)
  5. 0.432 R1in136 (SRR14708226)
  6. 0.425 R3in134 (SRR14708218)
  7. 0.425 80E (RSP11212)
  8. 0.425 JL yellow (RSP11075)
  9. 0.416 Beniko (SRR14708275)
  10. 0.415 R1in136 (SRR14708237)
  11. 0.414 VIR 223 - Bernburgskaya Odnodomnaya - bm (SRR14708217)
  12. 0.414 Santhica27 (RSP10056)
  13. 0.413 JL 4th Gen 2 (RSP11194)
  14. 0.413 IUP2 (SRR14708257)
  15. 0.413 R3in134 (SRR14708235)
  16. 0.413 Tanao Sri-white -80- (RSP11621)
  17. 0.412 Juso14 (SRR14708259)
  18. 0.412 Squirrel Tail -81- (RSP11622)
  19. 0.411 Feral (RSP10890)
  20. 0.411 White Label 1 (RSP11336)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346938
Overlapping SNPs:
68
Concordance:
42

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495218
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
9c6adae98176f1e4c5b36f0089ea3b2d42dbbd43a56ff41ce16c8e5b57fd2cb4
Stamping Certificate
Download PDF (853.1 KB)
SHASUM Hash
b037a3b9da953bd494e023341f84638e90cb438fced2439e677aac2ca3a98ef2
QR code for RSP11292

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