Advanced Strain Search

Jacks Cleaner

RSP 11347

Grower: Happy Valley

Summary

Jacks Cleaner (RSP11347/Happy Valley) is a genetic Type I plant and its genetics appear uncommon. The sample's closest relative in the database is Tangerine Haze (RSP10995/DigiPath Labs) and it is a potential sibling. The heterozygosity rate is 0.93% which is lower than average (21.3 percentile).

General Information

Accession Date
October 22, 2019
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.93%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0492
male female RSP11347

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
closely related moderately related distantly related
  1. 0.146 Tangerine Haze (RSP10995)
  2. 0.160 Saint Jack (RSP11179)
  3. 0.189 PWE (RSP11369)
  4. 0.193 RKM-2018-011 (RSP11102)
  5. 0.194 RKM-2018-025 (RSP11117)
  6. 0.195 Black Jack (RSP10603)
  7. 0.195 RKM-2018-016 (RSP11108)
  8. 0.195 Dave Pineapple (RSP11626)
  9. 0.196 UP Sunrise (RSP10989)
  10. 0.199 Erez 05MAY2017 (RSP10942)
  11. 0.199 Master Kush (RSP11497)
  12. 0.200 Blue Dream (RSP11017)
  13. 0.200 BLACK JACK (RSP11346)
  14. 0.200 Alaska USA (RSP11171)
  15. 0.202 Escape Velocity (RSP11165)
  16. 0.203 RKM-2018-006 (RSP11097)
  17. 0.206 Blue Dream (RSP11009)
  18. 0.206 JL X NSPM1 12 (RSP11472)
  19. 0.208 Alpine Rocket (SRR14708266)
  20. 0.209 Blue Dream (RSP11007)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
closely related moderately related distantly related
  1. 0.480 Cherry Blossom (RSP11334)
  2. 0.478 Cherry Blossom (RSP11311)
  3. 0.469 Cherry Blossom (RSP11328)
  4. 0.446 Cherry Blossom (RSP11314)
  5. 0.444 Unknown--Cherry Wine---003- (RSP11270)
  6. 0.443 Cherry Blossom (RSP11309)
  7. 0.442 Cherry Blossom (RSP11323)
  8. 0.441 Cherry Blossom (RSP11298)
  9. 0.440 80E (RSP11213)
  10. 0.435 Cbot-2019-005 (RSP11133)
  11. 0.434 Cherry Blossom (RSP11317)
  12. 0.431 Cherry Blossom (RSP11335)
  13. 0.431 Cherry Blossom (RSP11308)
  14. 0.430 80E (RSP11211)
  15. 0.428 Feral (RSP11205)
  16. 0.427 BagSeed (RSP12627)
  17. 0.426 Feral (RSP10890)
  18. 0.422 Cherry Blossom (RSP11321)
  19. 0.422 Red Eye OG (RSP11190)
  20. 0.421 Fatso (RSP11741)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448499
Overlapping SNPs:
66
Concordance:
47

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495248
Overlapping SNPs:
2
Concordance:
2

Blockchain Registration Information

Transaction ID
d8ac70e8467eddf819427d7dea3e08c3cabd0c5840d8467c4dd6172fdfd2cb8b
Stamping Certificate
Download PDF (849.7 KB)
SHASUM Hash
c08d40cfe2c5641408fb62b1db84a9d2013ae117ca41ac9cea7659ed25fef0f7
QR code for RSP11347

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