Mother's Milk No. 31

RSP11623
StrainSEEK Cannabis Certification Report

Accession Date:

July 29, 2020

General Information

Strain: Mother's Milk No. 31
Sample: mm31-/7-20
RSP ID: RSP11623
Grower: HendRx Farms
Accession Date: July 29, 2020
Gender: Female
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 1.02
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


What does this visualization mean?

Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCASc.749C>Ap.Ala250Aspmissense variantMODERATEcontig7414417079

IGV:Start|Jump

G/T

NGS:0.127

C90:0.632

0.127



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2a

UNIPROT

c.774G>Ap.Met258Ilemissense variantMODERATEcontig7001944616

IGV:Start|Jump

C/T

NGS:0.123

C90:0.000

0.123
PKSG-2a

UNIPROT

c.241G>Ap.Val81Metmissense variantMODERATEcontig7001945149

IGV:Start|Jump

C/T

NGS:0.136

C90:0.000

0.136
PKSG-2a

UNIPROT

c.240T>Gp.Asp80Glumissense variantMODERATEcontig7001945150

IGV:Start|Jump

A/C

NGS:0.136

C90:0.000

0.136
PKSG-2a

UNIPROT

c.230T>Cp.Val77Alamissense variantMODERATEcontig7001945160

IGV:Start|Jump

A/G

NGS:0.114

C90:0.000

0.114
PKSG-2a

UNIPROT

c.224A>Gp.Lys75Argmissense variantMODERATEcontig7001945166

IGV:Start|Jump

T/C

NGS:0.143

C90:0.962

0.143
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.948T>Gp.Asp316Glumissense variantMODERATEcontig7001950690

IGV:Start|Jump

A/C

NGS:0.456

C90:0.000

0.456
PKSG-2b

UNIPROT

c.945T>Gp.Ser315Argmissense variantMODERATEcontig7001950693

IGV:Start|Jump

A/C

NGS:0.454

C90:0.000

0.454
PKSG-2b

UNIPROT

c.944G>Ap.Ser315Asnmissense variantMODERATEcontig7001950694

IGV:Start|Jump

C/T

NGS:0.445

C90:0.000

0.445
PKSG-2b

UNIPROT

c.774G>Ap.Met258Ilemissense variantMODERATEcontig7001950864

IGV:Start|Jump

C/T

NGS:0.366

C90:0.947

0.366
PKSG-2b

UNIPROT

c.241G>Ap.Val81Metmissense variantMODERATEcontig7001951397

IGV:Start|Jump

C/T

NGS:0.154

C90:0.000

0.154
PKSG-2b

UNIPROT

c.240T>Gp.Asp80Glumissense variantMODERATEcontig7001951398

IGV:Start|Jump

A/C

NGS:0.156

C90:0.000

0.156
PKSG-2b

UNIPROT

c.230T>Cp.Val77Alamissense variantMODERATEcontig7001951408

IGV:Start|Jump

A/G

NGS:0.134

C90:0.646

0.134
PKSG-2b

UNIPROT

c.224A>Gp.Lys75Argmissense variantMODERATEcontig7001951414

IGV:Start|Jump

T/C

NGS:0.151

C90:0.957

0.151
PKSG-2b

UNIPROT

c.188T>Gp.Ile63Sermissense variantMODERATEcontig7001951450

IGV:Start|Jump

A/C

NGS:0.118

C90:0.000

0.118
PKSG-2b

UNIPROT

c.187A>Tp.Ile63Phemissense variantMODERATEcontig7001951451

IGV:Start|Jump

T/A

NGS:0.116

C90:0.000

0.116
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
PKSG-4b

UNIPROT

c.419A>Gp.Asp140Glymissense variantMODERATEcontig7002721254

IGV:Start|Jump

T/C

NGS:0.430

C90:0.440

0.43
PKSG-4b

UNIPROT

c.352_355delACAGp.Thr118fsframeshift variantHIGHcontig7002721317

IGV:Start|Jump

CCTGT/C

NGS:0.529

C90:0.000

0.529
PKSG-4b

UNIPROT

c.323A>Gp.Glu108Glymissense variantMODERATEcontig7002721350

IGV:Start|Jump

T/C

NGS:0.469

C90:0.000

0.469
DXR-2

UNIPROT

c.1319T>Cp.Ile440Thrmissense variantMODERATEcontig380285250

IGV:Start|Jump

A/G

NGS:0.480

C90:0.000

0.48
DXR-2

UNIPROT

c.431C>Gp.Ala144Glymissense variantMODERATEcontig380287760

IGV:Start|Jump

G/C

NGS:0.182

C90:0.550

0.182
aPT4

UNIPROT

c.35A>Cp.Gln12Promissense variantMODERATEcontig1212828691

IGV:Start|Jump

A/C

NGS:0.075

C90:0.000

0.075
aPT4

UNIPROT

c.97T>Cp.Tyr33Hismissense variantMODERATEcontig1212828753

IGV:Start|Jump

T/C

NGS:0.439

C90:0.000

0.439
aPT4

UNIPROT

c.153A>Cp.Lys51Asnmissense variantMODERATEcontig1212828809

IGV:Start|Jump

A/C

NGS:0.375

C90:0.000

0.375
aPT4

UNIPROT

c.198A>Cp.Lys66Asnmissense variantMODERATEcontig1212828854

IGV:Start|Jump

A/C

NGS:0.044

C90:0.000

0.044
aPT4

UNIPROT

c.216A>Tp.Lys72Asnmissense variantMODERATEcontig1212828872

IGV:Start|Jump

A/T

NGS:0.075

C90:0.000

0.075
aPT4

UNIPROT

c.235_236delGTp.Val79fsframeshift variantHIGHcontig1212829030

IGV:Start|Jump

ATG/A

NGS:0.417

C90:0.000

0.417
aPT4

UNIPROT

c.238delTp.Ser80fsframeshift variantHIGHcontig1212829034

IGV:Start|Jump

AT/A

NGS:0.421

C90:0.000

0.421
aPT4

UNIPROT

c.626A>Gp.Asn209Sermissense variantMODERATEcontig1212830904

IGV:Start|Jump

A/G

NGS:0.035

C90:0.000

0.035
aPT4

UNIPROT

c.1168T>Cp.Tyr390Hismissense variantMODERATEcontig1212833503

IGV:Start|Jump

T/C

NGS:0.546

C90:0.000

0.546
aPT1

UNIPROT

c.160A>Cp.Thr54Promissense variantMODERATEcontig1212835867

IGV:Start|Jump

A/C

NGS:0.086

C90:0.048

0.086
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
aPT1

UNIPROT

c.670T>Ap.Ser224Thrmissense variantMODERATEcontig1212840278

IGV:Start|Jump

T/A

NGS:0.077

C90:0.000

0.077
aPT1

UNIPROT

c.727G>Tp.Glu243*stop gainedHIGHcontig1212841362

IGV:Start|Jump

G/T

NGS:0.127

C90:0.100

0.127
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
HDS-2

UNIPROT

c.127T>Gp.Ser43Alamissense variantMODERATEcontig951989794

IGV:Start|Jump

T/G

NGS:0.721

C90:0.000

0.721
HDS-1

UNIPROT

c.-108+1_-108+2insGsplice donor variant&intron variantHIGHcontig1891889975

IGV:Start|Jump

A/AC

NGS:0.217

C90:0.000

0.217


NEAREST GENETIC RELATIVES TO Mother's Milk No. 31:
# Relative Genetic Distance
1 RSP11186-Mothers Milk 5 2.75
2 RSP11093-RKM-2018-002 5.26
3 RSP11241-501st OG 5.29
4 RSP11512-JL Cross 11 5.41
5 RSP11185-Chem 91 5.62
6 RSP11191-Super Sour Diesel 5.67
7 RSP11192-Headcheese 5.68
8 RSP11511-JL Cross 10 5.87
9 RSP11189-Tahoe OG 6.1
10 RSP11355-SHERBERT 6.14
11 RSP11352-Star Dawg 6.2
12 RSP11461-GG 4 6.29
13 RSP10243-East Coast Sour Diesel 6.3
14 RSP11184-Domnesia 6.39
15 RSP11353-Rugburn OG 6.47
16 RSP11109-RKM-2018-017 6.61
17 RSP11113-RKM-2018-021 6.62
18 RSP11124-RKM-2018-032 6.65
19 RSP11103-RKM-2018-012 6.71
20 RSP11362-NSPM1 6.74
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11093-RKM-2018-002 5.4
2 RSP11124-RKM-2018-032 6.84
3 RSP11100-RKM-2018-009 6.96
4 RSP11096-RKM-2018-005 7.26
5 RSP10837-Skywalker OG 7.37
6 RSP10684-Blueberry Cheesecake 7.4
7 RSP10680-Blueberry Cheesecake 7.56
8 RSP11050-Hermaphrodite ResearchSample2 7.81
9 RSP11073-Pie Hoe 8.02
10 RSP11118-RKM-2018-026 8.1
11 RSP11048-Gold Cracker 8.17
12 RSP11112-RKM-2018-020 8.2
13 RSP11049-Hermaphrodite Research Sample1 8.3
14 RSP11014-Durban Poison 8.59
15 RSP10989-UP Sunrise 8.66
16 RSP11000-Liberty Haze 8.71
17 RSP11125-RKM-2018-033 8.79
18 RSP11126-RKM-2018-034 8.91
19 RSP10551-Sour Raspberry 9.25
20 RSP11033-Blue Dream 9.33
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR8347108 88 77

Blockchain Registration Information:

Transaction ID:
Stamping Certificate: PDF
SHASUM Hash: 0c7ba4ab06477e205300414d38cbfd3cc9e002c885e3d0b64bfb8e99922cfb86