General Information
Chemical Information*
Cannabinoid and Terpenoid information provided by our Partner Labs.
CANNABINOIDS
THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A
TERPENOIDS
- α-Bisabolol %: N/A
Borneol %: N/A
Camphene %: N/A
Carene %: N/A
Caryophyllene oxide %: N/A
β-Carophyllene %: N/A
Fenchol %: N/A
Geraniol %: N/A
α-Humulene %: N/A
Limonene %: N/A
Linalool %: N/A
-
Myrcene %: N/A
α-Phellandrene %: N/A
Terpinolene %: N/A
α-Terpineol %: N/A
α-Terpinene %: N/A
γ-Terpinene %: N/A
Total Nerolidol %: N/A
Total Ocimene %: N/A
α-Pinene %: N/A
β-Pinene %: N/A
Genetic Information
View this strain on the Phylotree
Percent Heterozygosity: 0.65
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I
Percent Heterozygosity: 0.65
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I
CBCAS COVERAGE ![]() What does this visualization mean? |
Y-RATIO DISTRIBUTION ![]() What does this visualization mean? |
VARIANTS (THCAS, CBDAS, and CBCAS)
Gene | HGVS.c | HGVS.p | Annotation | Annotation Impact | Contig | Contig Pos | Ref/Alt | Var Freq | |
---|---|---|---|---|---|---|---|---|---|
THCAS | c.998C>G | p.Pro333Arg | missense variant | MODERATE | contig741 | 4416830 | G/C | NGS:0.182 C90:0.000 | 0.182 |
VARIANTS (SELECT GENES OF INTEREST)
Gene | HGVS.c | HGVS.p | Annotation | Annotation Impact | Contig | Contig Pos | Ref/Alt | Var Freq | |
---|---|---|---|---|---|---|---|---|---|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | MODERATE | contig700 | 1945567 | A/T | NGS:0.825 C90:0.904 | 0.825 |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | MODERATE | contig700 | 1945603 | T/A | NGS:0.763 C90:0.876 | 0.763 |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | MODERATE | contig700 | 2721177 | T/C | NGS:0.651 C90:0.684 | 0.651 |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | HIGH | contig700 | 2721183 | CA/C | NGS:0.792 C90:0.761 | 0.792 |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | MODERATE | contig700 | 2721188 | T/C | NGS:0.643 C90:0.301 | 0.643 |
aPT4 | c.775delT | p.Tyr259fs | frameshift variant | HIGH | contig121 | 2831380 | AT/A | NGS:0.224 C90:0.000 | 0.224 |
aPT1 | c.406A>G | p.Ile136Val | missense variant | MODERATE | contig121 | 2839605 | A/G | NGS:0.579 C90:0.761 | 0.579 |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | MODERATE | contig121 | 2840237 | C/T | NGS:0.561 C90:0.598 | 0.561 |
HDS-2 | c.82_93delGTAACCGGAACT | p.Val28_Thr31del | conservative inframe deletion | MODERATE | contig95 | 1989748 | CGTAACCGGAACT/C | NGS:0.805 C90:0.000 | 0.805 |
NEAREST GENETIC RELATIVES TO Skunk#18:
# | Relative | Genetic Distance |
---|---|---|
1 | RSP11038-Skunk 18 | 0.14 | 2 | RSP11115-RKM-2018-023 | 6.46 | 3 | RSP10991-Golden Goat 2 | 6.92 | 4 | RSP11344-Square Wave | 7.12 | 5 | RSP11041-Gold Cracker | 7.29 | 6 | RSP11177-Citrix | 7.51 | 7 | RSP11014-Durban Poison | 7.52 | 8 | RSP11013-Durban Poison 1 | 7.52 | 9 | RSP11222-Glueberry OG | 7.63 | 10 | RSP11110-RKM-2018-018 | 7.65 | 11 | RSP11048-Gold Cracker | 7.66 | 12 | RSP11094-RKM-2018-003 | 7.69 | 13 | RSP10460-Cheese | 7.69 | 14 | RSP11127-Jamaican Lions Ancestor | 7.72 | 15 | RSP11171-Alaska USA | 7.81 | 16 | RSP11134-Cbot-2019-006 | 7.81 | 17 | RSP10996-Durban Poison 1 | 7.81 | 18 | RSP11261-UP Wendigo | 7.83 | 19 | RSP11184-Domnesia | 7.87 | 20 | RSP10998-Durban Poison | 7.88 |
NEAREST GENETIC RELATIVES TO BASE TREE:
# | Relative | Genetic Distance |
---|---|---|
1 | RSP11038-Skunk 18 | 0.18 | 2 | RSP11115-RKM-2018-023 | 6.34 | 3 | RSP10991-Golden Goat 2 | 6.94 | 4 | RSP11048-Gold Cracker | 7.51 | 5 | RSP11125-RKM-2018-033 | 7.53 | 6 | RSP11094-RKM-2018-003 | 7.61 | 7 | RSP11014-Durban Poison | 7.63 | 8 | RSP11134-Cbot-2019-006 | 7.89 | 9 | RSP11110-RKM-2018-018 | 7.92 | 10 | RSP10684-Blueberry Cheesecake | 8.06 | 11 | RSP11119-RKM-2018-027 | 8.06 | 12 | RSP11112-RKM-2018-020 | 8.08 | 13 | RSP10988-The Gift | 8.1 | 14 | RSP11073-Pie Hoe | 8.24 | 15 | RSP11000-Liberty Haze | 8.3 | 16 | RSP11120-RKM-2018-028 | 8.31 | 17 | RSP10680-Blueberry Cheesecake | 8.38 | 18 | RSP11050-Hermaphrodite ResearchSample2 | 8.38 | 19 | RSP10997-Kimbo Slice | 8.43 | 20 | RSP11002-CST | 8.47 |
MOST GENETICALLY DISTANT STRAINS FROM Skunk#18:
# | Strain | Genetic Distance |
---|---|---|
1 | RSP11317-Cherry Blossom | 14.27 | 2 | RSP11306-Cherry Blossom | 14.23 | 3 | RSP11333-Cherry Blossom | 14.09 | 4 | RSP11324-Cherry Blossom | 13.8 | 5 | RSP11311-Cherry Blossom | 13.78 | 6 | RSP11323-Cherry Blossom | 13.74 | 7 | RSP11334-Cherry Blossom | 13.67 | 8 | RSP11314-Cherry Blossom | 13.66 | 9 | RSP11322-Cherry Blossom | 13.66 | 10 | RSP11318-Cherry Blossom | 13.64 | 11 | RSP11325-Cherry Blossom | 13.63 | 12 | RSP11330-Cherry Blossom | 13.62 | 13 | RSP11308-Cherry Blossom | 13.52 | 14 | RSP11335-Cherry Blossom | 13.33 | 15 | RSP11328-Cherry Blossom | 13.14 | 16 | RSP11268-Unknown- Cherry Wine - 001 | 13.05 | 17 | RSP11301-Cherry Blossom | 12.88 | 18 | RSP11329-Cherry Blossom | 12.66 | 19 | RSP11327-Cherry Blossom | 12.62 | 20 | RSP11274-Cherry Blossom | 12.57 |
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain | Number of Overlapping SNPs | Concordance |
---|---|---|
SRR8349067 | 112 | 71 |
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain | Number of Overlapping SNPs | Concordance |
---|---|---|
SRR3495285 | 11 | 11 |
Blockchain Registration Information:
Transaction ID: f7066261ba3789e181f6cbcbc72e4c712e29e8722dfe9218eaa92b5a074321ef
Stamping Certificate: PDF
SHASUM Hash: ee133b652522a3a540ee2a9d8f8f332ca8e28202220b3d12a989c5371c83fd66
Stamping Certificate: PDF
SHASUM Hash: ee133b652522a3a540ee2a9d8f8f332ca8e28202220b3d12a989c5371c83fd66