Skunk#18 | Kannapedia

General Information

Strain: Skunk#18
RSP ID: RSP11030
Grower: The Nature Farm
Accession Date: November 20, 2017
Gender: Female
Strain Seek Version: V2

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Chemical Information*

Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

α-Bisabolol %: N/A
Borneol %: N/A
Camphene %: N/A
Carene %: N/A
Caryophyllene oxide %: N/A
β-Carophyllene %: N/A
Fenchol %: N/A
Geraniol %: N/A
α-Humulene %: N/A
Limonene %: N/A
Linalool %: N/A
Myrcene %: N/A
α-Phellandrene %: N/A
Terpinolene %: N/A
α-Terpineol %: N/A
α-Terpinene %: N/A
γ-Terpinene %: N/A
Total Nerolidol %: N/A
Total Ocimene %: N/A
α-Pinene %: N/A
β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 0.65
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM _index
Download Annotated Variants: ANNOTATED VCF _index
Plant Type: Type I

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE

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Y-RATIO DISTRIBUTION

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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene	HGVS.c	HGVS.p	Annotation	Annotation Impact	Contig	Contig Pos	Ref/Alt	Var Freq
THCAS	c.998C>G	p.Pro333Arg	missense variant	MODERATE	contig741	4416830 _{IGV:Start\|Jump}	G/C	NGS:0.182 C90:0.000	0.182

VARIANTS (SELECT GENES OF INTEREST)

Gene	HGVS.c	HGVS.p	Annotation	Annotation Impact	Contig	Contig Pos	Ref/Alt	Var Freq
PKSG-2a _UNIPROT	c.67T>A	p.Phe23Ile	missense variant	MODERATE	contig700	1945567 _{IGV:Start\|Jump}	A/T	NGS:0.825 C90:0.904	0.825
PKSG-2a _UNIPROT	c.31A>T	p.Thr11Ser	missense variant	MODERATE	contig700	1945603 _{IGV:Start\|Jump}	T/A	NGS:0.763 C90:0.876	0.763
PKSG-4b _UNIPROT	c.496A>G	p.Lys166Glu	missense variant	MODERATE	contig700	2721177 _{IGV:Start\|Jump}	T/C	NGS:0.651 C90:0.684	0.651
PKSG-4b _UNIPROT	c.489delT	p.Phe163fs	frameshift variant	HIGH	contig700	2721183 _{IGV:Start\|Jump}	CA/C	NGS:0.792 C90:0.761	0.792
PKSG-4b _UNIPROT	c.485A>G	p.Lys162Arg	missense variant	MODERATE	contig700	2721188 _{IGV:Start\|Jump}	T/C	NGS:0.643 C90:0.301	0.643
aPT4 _UNIPROT	c.775delT	p.Tyr259fs	frameshift variant	HIGH	contig121	2831380 _{IGV:Start\|Jump}	AT/A	NGS:0.224 C90:0.000	0.224
aPT1 _UNIPROT	c.406A>G	p.Ile136Val	missense variant	MODERATE	contig121	2839605 _{IGV:Start\|Jump}	A/G	NGS:0.579 C90:0.761	0.579
aPT1 _UNIPROT	c.629C>T	p.Thr210Ile	missense variant	MODERATE	contig121	2840237 _{IGV:Start\|Jump}	C/T	NGS:0.561 C90:0.598	0.561
HDS-2 _UNIPROT	c.82_93delGTAACCGGAACT	p.Val28_Thr31del	conservative inframe deletion	MODERATE	contig95	1989748 _{IGV:Start\|Jump}	CGTAACCGGAACT/C	NGS:0.805 C90:0.000	0.805

NEAREST GENETIC RELATIVES TO Skunk#18:

#	Relative	Genetic Distance
1	RSP11038-Skunk 18	0.14
2	RSP11115-RKM-2018-023	6.46
3	RSP10991-Golden Goat 2	6.92
4	RSP11344-Square Wave	7.12
5	RSP11041-Gold Cracker	7.29
6	RSP11177-Citrix	7.51
7	RSP11014-Durban Poison	7.52
8	RSP11013-Durban Poison 1	7.52
9	RSP11222-Glueberry OG	7.63
10	RSP11110-RKM-2018-018	7.65
11	RSP11048-Gold Cracker	7.66
12	RSP11094-RKM-2018-003	7.69
13	RSP10460-Cheese	7.69
14	RSP11127-Jamaican Lions Ancestor	7.72
15	RSP11171-Alaska USA	7.81
16	RSP11134-Cbot-2019-006	7.81
17	RSP10996-Durban Poison 1	7.81
18	RSP11261-UP Wendigo	7.83
19	RSP11184-Domnesia	7.87
20	RSP10998-Durban Poison	7.88

NEAREST GENETIC RELATIVES TO BASE TREE:

#	Relative	Genetic Distance
1	RSP11038-Skunk 18	0.18
2	RSP11115-RKM-2018-023	6.34
3	RSP10991-Golden Goat 2	6.94
4	RSP11048-Gold Cracker	7.51
5	RSP11125-RKM-2018-033	7.53
6	RSP11094-RKM-2018-003	7.61
7	RSP11014-Durban Poison	7.63
8	RSP11134-Cbot-2019-006	7.89
9	RSP11110-RKM-2018-018	7.92
10	RSP10684-Blueberry Cheesecake	8.06
11	RSP11119-RKM-2018-027	8.06
12	RSP11112-RKM-2018-020	8.08
13	RSP10988-The Gift	8.1
14	RSP11073-Pie Hoe	8.24
15	RSP11000-Liberty Haze	8.3
16	RSP11120-RKM-2018-028	8.31
17	RSP10680-Blueberry Cheesecake	8.38
18	RSP11050-Hermaphrodite ResearchSample2	8.38
19	RSP10997-Kimbo Slice	8.43
20	RSP11002-CST	8.47

MOST GENETICALLY DISTANT STRAINS FROM Skunk#18:

#	Strain	Genetic Distance
1	RSP11317-Cherry Blossom	14.27
2	RSP11306-Cherry Blossom	14.23
3	RSP11333-Cherry Blossom	14.09
4	RSP11324-Cherry Blossom	13.8
5	RSP11311-Cherry Blossom	13.78
6	RSP11323-Cherry Blossom	13.74
7	RSP11334-Cherry Blossom	13.67
8	RSP11314-Cherry Blossom	13.66
9	RSP11322-Cherry Blossom	13.66
10	RSP11318-Cherry Blossom	13.64
11	RSP11325-Cherry Blossom	13.63
12	RSP11330-Cherry Blossom	13.62
13	RSP11308-Cherry Blossom	13.52
14	RSP11335-Cherry Blossom	13.33
15	RSP11328-Cherry Blossom	13.14
16	RSP11268-Unknown- Cherry Wine - 001	13.05
17	RSP11301-Cherry Blossom	12.88
18	RSP11329-Cherry Blossom	12.66
19	RSP11327-Cherry Blossom	12.62
20	RSP11274-Cherry Blossom	12.57

NEAREST GENETIC RELATIVES IN PHYLOS DATASET:

Phylos Strain	Number of Overlapping SNPs	Concordance
SRR8349067	112	71

NEAREST GENETIC RELATIVES IN LYNCH DATASET:

Nearest Lynch Strain	Number of Overlapping SNPs	Concordance
SRR3495285	11	11

Blockchain Registration Information:

Transaction ID: f7066261ba3789e181f6cbcbc72e4c712e29e8722dfe9218eaa92b5a074321ef
Stamping Certificate: PDF
SHASUM Hash: ee133b652522a3a540ee2a9d8f8f332ca8e28202220b3d12a989c5371c83fd66