Skunk#18

RSP11030
StrainSEEK Cannabis Certification Report

Accession Date:

November 20, 2017

General Information

Strain: Skunk#18
RSP ID: RSP11030
Grower: The Nature Farm
Accession Date: November 20, 2017
Gender: Female
Strain Seek Version: V2


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Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 0.65
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCASc.998C>Gp.Pro333Argmissense variantMODERATEcontig7414416830

IGV:Start|Jump

G/C

NGS:0.182

C90:0.000

0.182



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
aPT4

UNIPROT

c.775delTp.Tyr259fsframeshift variantHIGHcontig1212831380

IGV:Start|Jump

AT/A

NGS:0.224

C90:0.000

0.224
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
aPT1

UNIPROT

c.629C>Tp.Thr210Ilemissense variantMODERATEcontig1212840237

IGV:Start|Jump

C/T

NGS:0.561

C90:0.598

0.561
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805


NEAREST GENETIC RELATIVES TO Skunk#18:
# Relative Genetic Distance
1 RSP11038-Skunk 18 0.14
2 RSP11115-RKM-2018-023 6.46
3 RSP10991-Golden Goat 2 6.92
4 RSP11344-Square Wave 7.12
5 RSP11041-Gold Cracker 7.29
6 RSP11177-Citrix 7.51
7 RSP11014-Durban Poison 7.52
8 RSP11013-Durban Poison 1 7.52
9 RSP11222-Glueberry OG 7.63
10 RSP11110-RKM-2018-018 7.65
11 RSP11048-Gold Cracker 7.66
12 RSP11094-RKM-2018-003 7.69
13 RSP10460-Cheese 7.69
14 RSP11127-Jamaican Lions Ancestor 7.72
15 RSP11171-Alaska USA 7.81
16 RSP11134-Cbot-2019-006 7.81
17 RSP10996-Durban Poison 1 7.81
18 RSP11261-UP Wendigo 7.83
19 RSP11184-Domnesia 7.87
20 RSP10998-Durban Poison 7.88
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11038-Skunk 18 0.18
2 RSP11115-RKM-2018-023 6.34
3 RSP10991-Golden Goat 2 6.94
4 RSP11048-Gold Cracker 7.51
5 RSP11125-RKM-2018-033 7.53
6 RSP11094-RKM-2018-003 7.61
7 RSP11014-Durban Poison 7.63
8 RSP11134-Cbot-2019-006 7.89
9 RSP11110-RKM-2018-018 7.92
10 RSP10684-Blueberry Cheesecake 8.06
11 RSP11119-RKM-2018-027 8.06
12 RSP11112-RKM-2018-020 8.08
13 RSP10988-The Gift 8.1
14 RSP11073-Pie Hoe 8.24
15 RSP11000-Liberty Haze 8.3
16 RSP11120-RKM-2018-028 8.31
17 RSP10680-Blueberry Cheesecake 8.38
18 RSP11050-Hermaphrodite ResearchSample2 8.38
19 RSP10997-Kimbo Slice 8.43
20 RSP11002-CST 8.47
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR8349067 112 71
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495285 11 11

Blockchain Registration Information:

Transaction ID: f7066261ba3789e181f6cbcbc72e4c712e29e8722dfe9218eaa92b5a074321ef
Stamping Certificate: PDF
SHASUM Hash: ee133b652522a3a540ee2a9d8f8f332ca8e28202220b3d12a989c5371c83fd66