#4 Gina | Kannapedia

General Information

Strain: #4 Gina
RSP ID: RSP11647
Grower: Kevin McKernan
Accession Date: September 24, 2020
Gender: -
Strain Seek Version: CannSNP90

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Chemical Information*

Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

α-Bisabolol %: N/A
Borneol %: N/A
Camphene %: N/A
Carene %: N/A
Caryophyllene oxide %: N/A
β-Carophyllene %: N/A
Fenchol %: N/A
Geraniol %: N/A
α-Humulene %: N/A
Limonene %: N/A
Linalool %: N/A
Myrcene %: N/A
α-Phellandrene %: N/A
Terpinolene %: N/A
α-Terpineol %: N/A
α-Terpinene %: N/A
γ-Terpinene %: N/A
Total Nerolidol %: N/A
Total Ocimene %: N/A
α-Pinene %: N/A
β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Download VCF file: Here

Download Annotated Variants: ANNOTATED VCF _index
Plant Type: Type I

Bt/Bd ALLELE DETECTION ?

CBDAS LOG-R RATIO

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THCAS LOG-R RATIO

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CBCAS LOG-R RATIO

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PLANT SEX LOG-R RATIO

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SUMMARY OF DELETIONS (THCAS, CBDAS, and CBCAS) AND PLANT SEX

Gene/Plant Sex	Correlation	Call
THCAS	0.35	INTACT
CBDAS	0.99	DELETED
CBCAS	0.37	INTACT
Plant Sex	0.91	Female

VARIANTS (THCAS, CBDAS, and CBCAS)

Gene	HGVS.c	HGVS.p	Annotation	Annotation Impact	Contig	Contig Pos	Ref/Alt	Var Freq
THCAS	c.424G>A	p.Val142Ile	missense variant	MODERATE	contig741	4417404 _{IGV:Start\|Jump}	C/T	NGS:0.000 C90:0.761
THCAS	c.385G>A	p.Val129Ile	missense variant	MODERATE	contig741	4417443 _{IGV:Start\|Jump}	C/T	NGS:0.000 C90:0.947
THCAS	c.355A>T	p.Met119Leu	missense variant	MODERATE	contig741	4417473 _{IGV:Start\|Jump}	T/A	NGS:0.000 C90:0.962
THCAS	c.187A>C	p.Ile63Leu	missense variant	MODERATE	contig741	4417641 _{IGV:Start\|Jump}	T/G	NGS:0.059 C90:0.679	0.059

VARIANTS (SELECT GENES OF INTEREST)

Gene	HGVS.c	HGVS.p	Annotation	Annotation Impact	Contig	Contig Pos	Ref/Alt	Var Freq
PKSA-3b _UNIPROT	c.298G>A	p.Ala100Thr	missense variant	MODERATE	contig705	2271640 _{IGV:Start\|Jump}	C/T	NGS:0.044 C90:0.177	0.044
EMF1-2 _UNIPROT	c.710A>C	p.His237Pro	missense variant	MODERATE	contig885	810 _{IGV:Start\|Jump}	A/C	NGS:0.090 C90:0.474	0.09
PHL-2 _UNIPROT	c.455A>C	p.Asp152Ala	missense variant	MODERATE	contig2621	339191 _{IGV:Start\|Jump}	A/C	NGS:0.018 C90:0.507	0.018
PHL-2 _UNIPROT	c.1057A>G	p.Arg353Gly	missense variant	MODERATE	contig2621	340335 _{IGV:Start\|Jump}	A/G	NGS:0.096 C90:0.555	0.096
PHL-2 _UNIPROT	c.1096G>A	p.Ala366Thr	missense variant	MODERATE	contig2621	340374 _{IGV:Start\|Jump}	G/A	NGS:0.090 C90:0.531	0.09
PHL-2 _UNIPROT	c.1540A>G	p.Thr514Ala	missense variant	MODERATE	contig2621	340818 _{IGV:Start\|Jump}	A/G	NGS:0.042 C90:0.282	0.042
PHL-2 _UNIPROT	c.2564T>A	p.Phe855Tyr	missense variant	MODERATE	contig2621	342607 _{IGV:Start\|Jump}	T/A	NGS:0.064 C90:0.732	0.064
PHL-2 _UNIPROT	c.2578T>A	p.Leu860Ile	missense variant	MODERATE	contig2621	342621 _{IGV:Start\|Jump}	T/A	NGS:0.068 C90:0.746	0.068
PHL-2 _UNIPROT	c.2756A>C	p.Glu919Ala	missense variant	MODERATE	contig2621	342799 _{IGV:Start\|Jump}	A/C	NGS:0.064 C90:0.675	0.064
PHL-2 _UNIPROT	c.2783G>A	p.Ser928Asn	missense variant	MODERATE	contig2621	342826 _{IGV:Start\|Jump}	G/A	NGS:0.107 C90:0.890	0.107
PHL-2 _UNIPROT	c.2903_2905dupGCA	p.Ser968dup	disruptive inframe insertion	MODERATE	contig2621	342939 _{IGV:Start\|Jump}	T/TGCA	NGS:0.018 C90:0.522	0.018
PHL-2 _UNIPROT	c.3002A>G	p.Tyr1001Cys	missense variant	MODERATE	contig2621	343045 _{IGV:Start\|Jump}	A/G	NGS:0.055 C90:0.316	0.055
PHL-2 _UNIPROT	c.3027G>T	p.Lys1009Asn	missense variant	MODERATE	contig2621	343070 _{IGV:Start\|Jump}	G/T	NGS:0.055 C90:0.311	0.055
PHL-2 _UNIPROT	c.3033T>G	p.Cys1011Trp	missense variant	MODERATE	contig2621	343076 _{IGV:Start\|Jump}	T/G	NGS:0.055 C90:0.292	0.055
PHL-2 _UNIPROT	c.3209A>G	p.Gln1070Arg	missense variant	MODERATE	contig2621	343252 _{IGV:Start\|Jump}	A/G	NGS:0.103 C90:0.885	0.103
PHL-2 _UNIPROT	c.3467A>G	p.Gln1156Arg	missense variant	MODERATE	contig2621	343510 _{IGV:Start\|Jump}	A/G	NGS:0.064 C90:0.713	0.064
PKSG-2a _UNIPROT	c.1152T>A	p.Asn384Lys	missense variant	MODERATE	contig700	1944238 _{IGV:Start\|Jump}	A/T	NGS:0.009 C90:0.880	0.009
PKSG-2a _UNIPROT	c.1117A>G	p.Ile373Val	missense variant	MODERATE	contig700	1944273 _{IGV:Start\|Jump}	T/C	NGS:0.101 C90:0.967	0.101
PKSG-2a _UNIPROT	c.995C>T	p.Ser332Phe	missense variant	MODERATE	contig700	1944395 _{IGV:Start\|Jump}	G/A	NGS:0.015 C90:0.598	0.015
PKSG-2a _UNIPROT	c.781T>A	p.Leu261Ile	missense variant	MODERATE	contig700	1944609 _{IGV:Start\|Jump}	A/T	NGS:0.026 C90:0.574	0.026
PKSG-2a _UNIPROT	c.623T>C	p.Phe208Ser	missense variant	MODERATE	contig700	1944767 _{IGV:Start\|Jump}	A/G	NGS:0.000 C90:0.598
PKSG-2a _UNIPROT	c.224A>G	p.Lys75Arg	missense variant	MODERATE	contig700	1945166 _{IGV:Start\|Jump}	T/C	NGS:0.143 C90:0.962	0.143
PKSG-2a _UNIPROT	c.31A>T	p.Thr11Ser	missense variant	MODERATE	contig700	1945603 _{IGV:Start\|Jump}	T/A	NGS:0.763 C90:0.876	0.763
PKSG-2b _UNIPROT	c.1152T>A	p.Asn384Lys	missense variant	MODERATE	contig700	1950486 _{IGV:Start\|Jump}	A/T	NGS:0.715 C90:0.895	0.715
PKSG-2b _UNIPROT	c.1117A>G	p.Ile373Val	missense variant	MODERATE	contig700	1950521 _{IGV:Start\|Jump}	T/C	NGS:0.807 C90:0.981	0.807
PKSG-2b _UNIPROT	c.774G>A	p.Met258Ile	missense variant	MODERATE	contig700	1950864 _{IGV:Start\|Jump}	C/T	NGS:0.366 C90:0.947	0.366
PKSG-2b _UNIPROT	c.224A>G	p.Lys75Arg	missense variant	MODERATE	contig700	1951414 _{IGV:Start\|Jump}	T/C	NGS:0.151 C90:0.957	0.151
PKSG-2b _UNIPROT	c.167C>G	p.Thr56Ser	missense variant	MODERATE	contig700	1951471 _{IGV:Start\|Jump}	G/C	NGS:0.103 C90:0.947	0.103
PKSG-2b _UNIPROT	c.31A>T	p.Thr11Ser	missense variant	MODERATE	contig700	1951851 _{IGV:Start\|Jump}	T/A	NGS:0.844 C90:0.880	0.844
PKSG-4b _UNIPROT	c.523C>T	p.His175Tyr	missense variant	MODERATE	contig700	2721150 _{IGV:Start\|Jump}	G/A	NGS:0.112 C90:0.325	0.112
PKSG-4b _UNIPROT	c.496A>G	p.Lys166Glu	missense variant	MODERATE	contig700	2721177 _{IGV:Start\|Jump}	T/C	NGS:0.651 C90:0.684	0.651
PKSG-4b _UNIPROT	c.489delT	p.Phe163fs	frameshift variant	HIGH	contig700	2721183 _{IGV:Start\|Jump}	CA/C	NGS:0.792 C90:0.761	0.792
PKSG-4b _UNIPROT	c.431T>G	p.Val144Gly	missense variant	MODERATE	contig700	2721242 _{IGV:Start\|Jump}	A/C	NGS:0.575 C90:0.679	0.575
PKSG-4b _UNIPROT	c.419A>G	p.Asp140Gly	missense variant	MODERATE	contig700	2721254 _{IGV:Start\|Jump}	T/C	NGS:0.430 C90:0.440	0.43
PKSG-4b _UNIPROT	c.316+2T>A		splice donor variant&intron variant	HIGH	contig700	2723818 _{IGV:Start\|Jump}	A/T	NGS:0.070 C90:0.689	0.07
DXR-2 _UNIPROT	c.431C>G	p.Ala144Gly	missense variant	MODERATE	contig380	287760 _{IGV:Start\|Jump}	G/C	NGS:0.182 C90:0.550	0.182
OAC-2 _UNIPROT	c.220A>G	p.Ile74Val	missense variant	MODERATE	contig931	110019 _{IGV:Start\|Jump}	T/C	NGS:0.011 C90:0.670	0.011
OAC-1 _UNIPROT	c.220A>G	p.Ile74Val	missense variant	MODERATE	contig931	118144 _{IGV:Start\|Jump}	T/C	NGS:0.033 C90:0.670	0.033
ELF3 _UNIPROT	c.358G>A	p.Gly120Arg	missense variant	MODERATE	contig97	242064 _{IGV:Start\|Jump}	G/A	NGS:0.099 C90:0.493	0.099
ELF3 _UNIPROT	c.520A>C	p.Asn174His	missense variant	MODERATE	contig97	242226 _{IGV:Start\|Jump}	A/C	NGS:0.094 C90:0.502	0.094
ELF3 _UNIPROT	c.812G>C	p.Gly271Ala	missense variant	MODERATE	contig97	242518 _{IGV:Start\|Jump}	G/C	NGS:0.114 C90:0.938	0.114
ELF3 _UNIPROT	c.1230-2_1230-1delAG		splice acceptor variant&intron variant	HIGH	contig97	243676 _{IGV:Start\|Jump}	TAG/T	NGS:0.088 C90:0.450	0.088
ELF3 _UNIPROT	c.1630A>G	p.Thr544Ala	missense variant	MODERATE	contig97	244461 _{IGV:Start\|Jump}	A/G	NGS:0.103 C90:0.545	0.103
ELF3 _UNIPROT	c.1966C>G	p.Pro656Ala	missense variant	MODERATE	contig97	244797 _{IGV:Start\|Jump}	C/G	NGS:0.123 C90:0.632	0.123
ELF3 _UNIPROT	c.2141C>G	p.Pro714Arg	missense variant	MODERATE	contig97	244972 _{IGV:Start\|Jump}	C/G	NGS:0.088 C90:0.335	0.088
ELF3 _UNIPROT	c.2198delG	p.Arg733fs	frameshift variant	HIGH	contig97	245028 _{IGV:Start\|Jump}	CG/C	NGS:0.002 C90:0.612	0.002
aPT1 _UNIPROT	c.406A>G	p.Ile136Val	missense variant	MODERATE	contig121	2839605 _{IGV:Start\|Jump}	A/G	NGS:0.579 C90:0.761	0.579
PHL-1 _UNIPROT	c.2651C>T	p.Ala884Val	missense variant	MODERATE	contig1439	1487146 _{IGV:Start\|Jump}	G/A	NGS:0.044 C90:0.622	0.044
PHL-1 _UNIPROT	c.2561A>T	p.Asn854Ile	missense variant	MODERATE	contig1439	1487236 _{IGV:Start\|Jump}	T/A	NGS:0.046 C90:0.612	0.046
PHL-1 _UNIPROT	c.2551A>G	p.Thr851Ala	missense variant	MODERATE	contig1439	1487246 _{IGV:Start\|Jump}	T/C	NGS:0.116 C90:0.890	0.116
PHL-1 _UNIPROT	c.1387A>G	p.Thr463Ala	missense variant	MODERATE	contig1439	1489811 _{IGV:Start\|Jump}	T/C	NGS:0.107 C90:0.904	0.107
TFL1 _UNIPROT	c.302-1G>A		splice acceptor variant&intron variant	HIGH	contig1636	520616 _{IGV:Start\|Jump}	C/T	NGS:0.103 C90:0.794	0.103
HDS-1 _UNIPROT	c.1618A>G	p.Ile540Val	missense variant	MODERATE	contig1891	885936 _{IGV:Start\|Jump}	T/C	NGS:0.099 C90:0.861	0.099
HDS-1 _UNIPROT	c.56C>G	p.Ala19Gly	missense variant	MODERATE	contig1891	889336 _{IGV:Start\|Jump}	G/C	NGS:0.125 C90:0.943	0.125
PIE1-2 _UNIPROT	c.6653A>G	p.Asn2218Ser	missense variant	MODERATE	contig1460	1184434 _{IGV:Start\|Jump}	T/C	NGS:0.059 C90:0.928	0.059
PIE1-2 _UNIPROT	c.6636T>G	p.Asp2212Glu	missense variant	MODERATE	contig1460	1184451 _{IGV:Start\|Jump}	A/C	NGS:0.035 C90:0.885	0.035
PIE1-2 _UNIPROT	c.6623C>T	p.Ala2208Val	missense variant	MODERATE	contig1460	1184464 _{IGV:Start\|Jump}	G/A	NGS:0.044 C90:0.689	0.044
PIE1-2 _UNIPROT	c.5932A>G	p.Ile1978Val	missense variant	MODERATE	contig1460	1185552 _{IGV:Start\|Jump}	T/C	NGS:0.061 C90:0.268	0.061
PIE1-2 _UNIPROT	c.5132T>C	p.Ile1711Thr	missense variant	MODERATE	contig1460	1186607 _{IGV:Start\|Jump}	A/G	NGS:0.000 C90:0.852
PIE1-2 _UNIPROT	c.2083_2085delGTC	p.Val695del	conservative inframe deletion	MODERATE	contig1460	1189954 _{IGV:Start\|Jump}	GGAC/G	NGS:0.046 C90:0.880	0.046
PIE1-2 _UNIPROT	c.1872T>A	p.Asp624Glu	missense variant	MODERATE	contig1460	1190252 _{IGV:Start\|Jump}	A/T	NGS:0.086 C90:0.990	0.086
PIE1-2 _UNIPROT	c.1630G>C	p.Ala544Pro	missense variant	MODERATE	contig1460	1191600 _{IGV:Start\|Jump}	C/G	NGS:0.070 C90:0.933	0.07
PIE1-2 _UNIPROT	c.1318A>G	p.Asn440Asp	missense variant	MODERATE	contig1460	1192080 _{IGV:Start\|Jump}	T/C	NGS:0.018 C90:0.100	0.018
PIE1-2 _UNIPROT	c.1294G>A	p.Asp432Asn	missense variant	MODERATE	contig1460	1192104 _{IGV:Start\|Jump}	C/T	NGS:0.018 C90:0.100	0.018
PIE1-2 _UNIPROT	c.1279G>A	p.Val427Ile	missense variant	MODERATE	contig1460	1192119 _{IGV:Start\|Jump}	C/T	NGS:0.018 C90:0.105	0.018
PIE1-2 _UNIPROT	c.1156T>G	p.Trp386Gly	missense variant	MODERATE	contig1460	1192242 _{IGV:Start\|Jump}	A/C	NGS:0.009 C90:0.976	0.009
PIE1-2 _UNIPROT	c.1144G>T	p.Val382Leu	missense variant	MODERATE	contig1460	1192254 _{IGV:Start\|Jump}	C/A	NGS:0.000 C90:0.105
PIE1-2 _UNIPROT	c.1093G>A	p.Gly365Ser	missense variant	MODERATE	contig1460	1192305 _{IGV:Start\|Jump}	C/T	NGS:0.002 C90:0.986	0.002
PIE1-2 _UNIPROT	c.1015G>A	p.Asp339Asn	missense variant	MODERATE	contig1460	1192383 _{IGV:Start\|Jump}	C/T	NGS:0.007 C90:0.100	0.007
PIE1-2 _UNIPROT	c.982G>A	p.Glu328Lys	missense variant	MODERATE	contig1460	1192416 _{IGV:Start\|Jump}	C/T	NGS:0.050 C90:0.976	0.05
PIE1-2 _UNIPROT	c.961C>T	p.Arg321Trp	missense variant	MODERATE	contig1460	1192437 _{IGV:Start\|Jump}	G/A	NGS:0.013 C90:0.100	0.013
PIE1-2 _UNIPROT	c.710C>T	p.Pro237Leu	missense variant	MODERATE	contig1460	1193804 _{IGV:Start\|Jump}	G/A	NGS:0.072 C90:0.866	0.072
PIE1-2 _UNIPROT	c.637T>A	p.Ser213Thr	missense variant	MODERATE	contig1460	1194421 _{IGV:Start\|Jump}	A/T	NGS:0.079 C90:0.885	0.079
PIE1-2 _UNIPROT	c.349C>T	p.Pro117Ser	missense variant&splice region variant	MODERATE	contig1460	1195017 _{IGV:Start\|Jump}	G/A	NGS:0.000 C90:0.962
EMF2 _UNIPROT	c.1772A>G	p.Gln591Arg	missense variant	MODERATE	contig954	3059929 _{IGV:Start\|Jump}	A/G	NGS:0.092 C90:0.876	0.092
FT _UNIPROT	c.13C>G	p.Leu5Val	missense variant	MODERATE	contig1561	3124437 _{IGV:Start\|Jump}	C/G	NGS:0.031 C90:0.153	0.031
FLD _UNIPROT	c.2981T>C	p.Met994Thr	missense variant	MODERATE	contig1450	2044012 _{IGV:Start\|Jump}	A/G	NGS:0.064 C90:0.478	0.064
FLD _UNIPROT	c.2964C>A	p.Asp988Glu	missense variant	MODERATE	contig1450	2044029 _{IGV:Start\|Jump}	G/T	NGS:0.057 C90:0.464	0.057
FLD _UNIPROT	c.2929T>C	p.Phe977Leu	missense variant	MODERATE	contig1450	2044103 _{IGV:Start\|Jump}	A/G	NGS:0.026 C90:0.349	0.026
FLD _UNIPROT	c.125G>A	p.Ser42Asn	missense variant	MODERATE	contig1450	2047909 _{IGV:Start\|Jump}	C/T	NGS:0.037 C90:0.388	0.037
PKSA-3a _UNIPROT	c.298G>A	p.Ala100Thr	missense variant	MODERATE	contig1357	1144811 _{IGV:Start\|Jump}	G/A	NGS:0.000 C90:0.177
PIE1-1 _UNIPROT	c.742T>A	p.Ser248Thr	missense variant	MODERATE	contig1225	2279320 _{IGV:Start\|Jump}	T/A	NGS:0.002 C90:0.890	0.002
PIE1-1 _UNIPROT	c.773A>G	p.Asn258Ser	missense variant&splice region variant	MODERATE	contig1225	2279897 _{IGV:Start\|Jump}	A/G	NGS:0.033 C90:0.895	0.033
PIE1-1 _UNIPROT	c.815C>T	p.Pro272Leu	missense variant	MODERATE	contig1225	2279939 _{IGV:Start\|Jump}	C/T	NGS:0.029 C90:0.885	0.029
PIE1-1 _UNIPROT	c.1066C>T	p.Arg356Trp	missense variant	MODERATE	contig1225	2281326 _{IGV:Start\|Jump}	C/T	NGS:0.015 C90:0.105	0.015
PIE1-1 _UNIPROT	c.1222C>G	p.Gln408Glu	missense variant	MODERATE	contig1225	2281482 _{IGV:Start\|Jump}	C/G	NGS:0.096 C90:0.852	0.096
PIE1-1 _UNIPROT	c.1249G>T	p.Val417Leu	missense variant	MODERATE	contig1225	2281509 _{IGV:Start\|Jump}	G/T	NGS:0.020 C90:0.096	0.02
PIE1-1 _UNIPROT	c.1384G>A	p.Val462Ile	missense variant	MODERATE	contig1225	2281644 _{IGV:Start\|Jump}	G/A	NGS:0.002 C90:0.105	0.002
PIE1-1 _UNIPROT	c.1394A>G	p.Asp465Gly	missense variant	MODERATE	contig1225	2281654 _{IGV:Start\|Jump}	A/G	NGS:0.007 C90: