#10 Gwendolyn

RSP11653
StrainSEEK Cannabis Certification Report

Accession Date:

September 24, 2020

General Information

Strain: #10 Gwendolyn
RSP ID: RSP11653
Grower: Kevin McKernan
Accession Date: September 24, 2020
Gender: -
Strain Seek Version: CannSNP90


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Download VCF file: Here

Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I

Bt/Bd ALLELE DETECTION ?

CBDAS LOG-R RATIO


What does this visualization mean?

THCAS LOG-R RATIO


What does this visualization mean?

CBCAS LOG-R RATIO


What does this visualization mean?

PLANT SEX LOG-R RATIO


What does this visualization mean?

SUMMARY OF DELETIONS (THCAS, CBDAS, and CBCAS) AND PLANT SEX

Gene/Plant Sex Correlation Call
THCAS 0.45 INTACT
CBDAS 0.97 DELETED
CBCAS 0.39 INTACT
Plant Sex 0.93 Female


VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCASc.424G>Ap.Val142Ilemissense variantMODERATEcontig7414417404

IGV:Start|Jump

C/T

NGS:0.000

C90:0.761

THCASc.385G>Ap.Val129Ilemissense variantMODERATEcontig7414417443

IGV:Start|Jump

C/T

NGS:0.000

C90:0.947

THCASc.355A>Tp.Met119Leumissense variantMODERATEcontig7414417473

IGV:Start|Jump

T/A

NGS:0.000

C90:0.962

THCASc.187A>Cp.Ile63Leumissense variantMODERATEcontig7414417641

IGV:Start|Jump

T/G

NGS:0.059

C90:0.679

0.059



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSA-3b

UNIPROT

c.298G>Ap.Ala100Thrmissense variantMODERATEcontig7052271640

IGV:Start|Jump

C/T

NGS:0.044

C90:0.177

0.044
EMF1-2

UNIPROT

c.710A>Cp.His237Promissense variantMODERATEcontig885810

IGV:Start|Jump

A/C

NGS:0.090

C90:0.474

0.09
PHL-2

UNIPROT

c.455A>Cp.Asp152Alamissense variantMODERATEcontig2621339191

IGV:Start|Jump

A/C

NGS:0.018

C90:0.507

0.018
PHL-2

UNIPROT

c.1057A>Gp.Arg353Glymissense variantMODERATEcontig2621340335

IGV:Start|Jump

A/G

NGS:0.096

C90:0.555

0.096
PHL-2

UNIPROT

c.1096G>Ap.Ala366Thrmissense variantMODERATEcontig2621340374

IGV:Start|Jump

G/A

NGS:0.090

C90:0.531

0.09
PHL-2

UNIPROT

c.1540A>Gp.Thr514Alamissense variantMODERATEcontig2621340818

IGV:Start|Jump

A/G

NGS:0.042

C90:0.282

0.042
PHL-2

UNIPROT

c.2564T>Ap.Phe855Tyrmissense variantMODERATEcontig2621342607

IGV:Start|Jump

T/A

NGS:0.064

C90:0.732

0.064
PHL-2

UNIPROT

c.2578T>Ap.Leu860Ilemissense variantMODERATEcontig2621342621

IGV:Start|Jump

T/A

NGS:0.068

C90:0.746

0.068
PHL-2

UNIPROT

c.2783G>Ap.Ser928Asnmissense variantMODERATEcontig2621342826

IGV:Start|Jump

G/A

NGS:0.107

C90:0.890

0.107
PHL-2

UNIPROT

c.2903_2905dupGCAp.Ser968dupdisruptive inframe insertionMODERATEcontig2621342939

IGV:Start|Jump

T/TGCA

NGS:0.018

C90:0.522

0.018
PHL-2

UNIPROT

c.3002A>Gp.Tyr1001Cysmissense variantMODERATEcontig2621343045

IGV:Start|Jump

A/G

NGS:0.055

C90:0.316

0.055
PHL-2

UNIPROT

c.3027G>Tp.Lys1009Asnmissense variantMODERATEcontig2621343070

IGV:Start|Jump

G/T

NGS:0.055

C90:0.311

0.055
PHL-2

UNIPROT

c.3033T>Gp.Cys1011Trpmissense variantMODERATEcontig2621343076

IGV:Start|Jump

T/G

NGS:0.055

C90:0.292

0.055
PHL-2

UNIPROT

c.3209A>Gp.Gln1070Argmissense variantMODERATEcontig2621343252

IGV:Start|Jump

A/G

NGS:0.103

C90:0.885

0.103
PHL-2

UNIPROT

c.3467A>Gp.Gln1156Argmissense variantMODERATEcontig2621343510

IGV:Start|Jump

A/G

NGS:0.064

C90:0.713

0.064
PKSG-4a

UNIPROT

c.1000T>Cp.Tyr334Hismissense variantMODERATEcontig7001938411

IGV:Start|Jump

T/C

NGS:0.002

C90:0.804

0.002
PKSG-2a

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001944238

IGV:Start|Jump

A/T

NGS:0.009

C90:0.880

0.009
PKSG-2a

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001944273

IGV:Start|Jump

T/C

NGS:0.101

C90:0.967

0.101
PKSG-2a

UNIPROT

c.995C>Tp.Ser332Phemissense variantMODERATEcontig7001944395

IGV:Start|Jump

G/A

NGS:0.015

C90:0.598

0.015
PKSG-2a

UNIPROT

c.781T>Ap.Leu261Ilemissense variantMODERATEcontig7001944609

IGV:Start|Jump

A/T

NGS:0.026

C90:0.574

0.026
PKSG-2a

UNIPROT

c.623T>Cp.Phe208Sermissense variantMODERATEcontig7001944767

IGV:Start|Jump

A/G

NGS:0.000

C90:0.598

PKSG-2a

UNIPROT

c.224A>Gp.Lys75Argmissense variantMODERATEcontig7001945166

IGV:Start|Jump

T/C

NGS:0.143

C90:0.962

0.143
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.774G>Ap.Met258Ilemissense variantMODERATEcontig7001950864

IGV:Start|Jump

C/T

NGS:0.366

C90:0.947

0.366
PKSG-2b

UNIPROT

c.224A>Gp.Lys75Argmissense variantMODERATEcontig7001951414

IGV:Start|Jump

T/C

NGS:0.151

C90:0.957

0.151
PKSG-2b

UNIPROT

c.167C>Gp.Thr56Sermissense variantMODERATEcontig7001951471

IGV:Start|Jump

G/C

NGS:0.103

C90:0.947

0.103
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
PKSG-4b

UNIPROT

c.419A>Gp.Asp140Glymissense variantMODERATEcontig7002721254

IGV:Start|Jump

T/C

NGS:0.430

C90:0.440

0.43
DXR-2

UNIPROT

c.431C>Gp.Ala144Glymissense variantMODERATEcontig380287760

IGV:Start|Jump

G/C

NGS:0.182

C90:0.550

0.182
OAC-2

UNIPROT

c.220A>Gp.Ile74Valmissense variantMODERATEcontig931110019

IGV:Start|Jump

T/C

NGS:0.011

C90:0.670

0.011
OAC-1

UNIPROT

c.220A>Gp.Ile74Valmissense variantMODERATEcontig931118144

IGV:Start|Jump

T/C

NGS:0.033

C90:0.670

0.033
ELF3

UNIPROT

c.358G>Ap.Gly120Argmissense variantMODERATEcontig97242064

IGV:Start|Jump

G/A

NGS:0.099

C90:0.493

0.099
ELF3

UNIPROT

c.520A>Cp.Asn174Hismissense variantMODERATEcontig97242226

IGV:Start|Jump

A/C

NGS:0.094

C90:0.502

0.094
ELF3

UNIPROT

c.574A>Gp.Asn192Aspmissense variantMODERATEcontig97242280

IGV:Start|Jump

A/G

NGS:0.042

C90:0.579

0.042
ELF3

UNIPROT

c.812G>Cp.Gly271Alamissense variantMODERATEcontig97242518

IGV:Start|Jump

G/C

NGS:0.114

C90:0.938

0.114
ELF3

UNIPROT

c.1230-2_1230-1delAGsplice acceptor variant&intron variantHIGHcontig97243676

IGV:Start|Jump

TAG/T

NGS:0.088

C90:0.450

0.088
ELF3

UNIPROT

c.1630A>Gp.Thr544Alamissense variantMODERATEcontig97244461

IGV:Start|Jump

A/G

NGS:0.103

C90:0.545

0.103
ELF3

UNIPROT

c.1966C>Gp.Pro656Alamissense variantMODERATEcontig97244797

IGV:Start|Jump

C/G

NGS:0.123

C90:0.632

0.123
ELF3

UNIPROT

c.2141C>Gp.Pro714Argmissense variantMODERATEcontig97244972

IGV:Start|Jump

C/G

NGS:0.088

C90:0.335

0.088
ELF3

UNIPROT

c.2198delGp.Arg733fsframeshift variantHIGHcontig97245028

IGV:Start|Jump

CG/C

NGS:0.002

C90:0.612

0.002
ELF3

UNIPROT

c.2198G>Tp.Arg733Leumissense variantMODERATEcontig97245029

IGV:Start|Jump

G/T

NGS:0.125

C90:0.531

0.125
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
aPT1

UNIPROT

c.629C>Tp.Thr210Ilemissense variantMODERATEcontig1212840237

IGV:Start|Jump

C/T

NGS:0.561

C90:0.598

0.561
PHL-1

UNIPROT

c.2651C>Tp.Ala884Valmissense variantMODERATEcontig14391487146

IGV:Start|Jump

G/A

NGS:0.044

C90:0.622

0.044
PHL-1

UNIPROT

c.2561A>Tp.Asn854Ilemissense variantMODERATEcontig14391487236

IGV:Start|Jump

T/A

NGS:0.046

C90:0.612

0.046
PHL-1

UNIPROT

c.2551A>Gp.Thr851Alamissense variantMODERATEcontig14391487246

IGV:Start|Jump

T/C

NGS:0.116

C90:0.890

0.116
PHL-1

UNIPROT

c.1387A>Gp.Thr463Alamissense variantMODERATEcontig14391489811

IGV:Start|Jump

T/C

NGS:0.107

C90:0.904

0.107
TFL1

UNIPROT

c.302-1G>Asplice acceptor variant&intron variantHIGHcontig1636520616

IGV:Start|Jump

C/T

NGS:0.103

C90:0.794

0.103
HDS-1

UNIPROT

c.1618A>Gp.Ile540Valmissense variantMODERATEcontig1891885936

IGV:Start|Jump

T/C

NGS:0.099

C90:0.861

0.099
HDS-1

UNIPROT

c.136G>Ap.Val46Ilemissense variantMODERATEcontig1891889256

IGV:Start|Jump

C/T

NGS:0.088

C90:0.593

0.088
HDS-1

UNIPROT

c.56C>Gp.Ala19Glymissense variantMODERATEcontig1891889336

IGV:Start|Jump

G/C

NGS:0.125

C90:0.943

0.125
HDS-1

UNIPROT

c.35G>Ap.Cys12Tyrmissense variantMODERATEcontig1891889357

IGV:Start|Jump

C/T

NGS:0.094

C90:0.646

0.094
PIE1-2

UNIPROT

c.6773T>Cp.Leu2258Sermissense variantMODERATEcontig14601184314

IGV:Start|Jump

A/G

NGS:0.046

C90:0.675

0.046
PIE1-2

UNIPROT

c.6653A>Gp.Asn2218Sermissense variantMODERATEcontig14601184434

IGV:Start|Jump

T/C

NGS:0.059

C90:0.928

0.059
PIE1-2

UNIPROT

c.6636T>Gp.Asp2212Glumissense variantMODERATEcontig14601184451

IGV:Start|Jump

A/C

NGS:0.035

C90:0.885

0.035
PIE1-2

UNIPROT

c.6307A>Cp.Lys2103Glnmissense variantMODERATEcontig14601185177

IGV:Start|Jump

T/G

NGS:0.004

C90:0.679

0.004
PIE1-2

UNIPROT

c.6055C>Tp.Leu2019Phemissense variantMODERATEcontig14601185429

IGV:Start|Jump

G/A

NGS:0.015

C90:0.469

0.015
PIE1-2

UNIPROT

c.5932A>Gp.Ile1978Valmissense variantMODERATEcontig14601185552

IGV:Start|Jump

T/C

NGS:0.061

C90:0.268

0.061
PIE1-2

UNIPROT

c.5132T>Cp.Ile1711Thrmissense variantMODERATEcontig14601186607

IGV:Start|Jump

A/G

NGS:0.000

C90:0.852

PIE1-2

UNIPROT

c.3512A>Gp.Lys1171Argmissense variantMODERATEcontig14601188528

IGV:Start|Jump

T/C

NGS:0.018

C90:0.670

0.018
PIE1-2

UNIPROT

c.2083_2085delGTCp.Val695delconservative inframe deletionMODERATEcontig14601189954

IGV:Start|Jump

GGAC/G

NGS:0.046

C90:0.880

0.046
PIE1-2

UNIPROT

c.2072A>Gp.His691Argmissense variantMODERATEcontig14601189968

IGV:Start|Jump

T/C

NGS:0.046

C90:0.789

0.046
PIE1-2

UNIPROT

c.1872T>Ap.Asp624Glumissense variantMODERATEcontig14601190252

IGV:Start|Jump

A/T

NGS:0.086

C90:0.990

0.086
PIE1-2

UNIPROT

c.1630G>Cp.Ala544Promissense variantMODERATEcontig14601191600

IGV:Start|Jump

C/G

NGS:0.070

C90:0.933

0.07
PIE1-2

UNIPROT

c.1318A>Gp.Asn440Aspmissense variantMODERATEcontig14601192080

IGV:Start|Jump

T/C

NGS:0.018

C90:0.100

0.018
PIE1-2

UNIPROT

c.1294G>Ap.Asp432Asnmissense variantMODERATEcontig14601192104

IGV:Start|Jump

C/T

NGS:0.018

C90:0.100

0.018
PIE1-2

UNIPROT

c.1279G>Ap.Val427Ilemissense variantMODERATEcontig14601192119

IGV:Start|Jump

C/T

NGS:0.018

C90:0.105

0.018
PIE1-2

UNIPROT

c.1156T>Gp.Trp386Glymissense variantMODERATEcontig14601192242

IGV:Start|Jump

A/C

NGS:0.009

C90:0.976

0.009
PIE1-2

UNIPROT

c.1144G>Tp.Val382Leumissense variantMODERATEcontig14601192254

IGV:Start|Jump

C/A

NGS:0.000

C90:0.105

PIE1-2

UNIPROT

c.1117C>Gp.Gln373Glumissense variantMODERATEcontig14601192281

IGV:Start|Jump

G/C

NGS:0.002

C90:0.818

0.002
PIE1-2

UNIPROT

c.1093G>Ap.Gly365Sermissense variantMODERATEcontig14601192305

IGV:Start|Jump

C/T

NGS:0.002

C90:0.986

0.002
PIE1-2

UNIPROT

c.1015G>Ap.Asp339Asnmissense variantMODERATEcontig14601192383

IGV:Start|Jump

C/T

NGS:0.007

C90:0.100

0.007
PIE1-2

UNIPROT

c.982G>Ap.Glu328Lysmissense variantMODERATEcontig14601192416

IGV:Start|Jump

C/T

NGS:0.050

C90:0.976

0.05
PIE1-2

UNIPROT

c.961C>Tp.Arg321Trpmissense variantMODERATEcontig14601192437

IGV:Start|Jump

G/A

NGS:0.013

C90:0.100

0.013
PIE1-2

UNIPROT

c.710C>Tp.Pro237Leumissense variantMODERATEcontig14601193804

IGV:Start|Jump

G/A

NGS: