#11 Janis | Kannapedia

General Information

Strain: #11 Janis
RSP ID: RSP11654
Grower: Kevin McKernan
Accession Date: September 24, 2020
Gender: -
Strain Seek Version: CannSNP90

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Chemical Information*

Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

α-Bisabolol %: N/A
Borneol %: N/A
Camphene %: N/A
Carene %: N/A
Caryophyllene oxide %: N/A
β-Carophyllene %: N/A
Fenchol %: N/A
Geraniol %: N/A
α-Humulene %: N/A
Limonene %: N/A
Linalool %: N/A
Myrcene %: N/A
α-Phellandrene %: N/A
Terpinolene %: N/A
α-Terpineol %: N/A
α-Terpinene %: N/A
γ-Terpinene %: N/A
Total Nerolidol %: N/A
Total Ocimene %: N/A
α-Pinene %: N/A
β-Pinene %: N/A

Genetic Information

Download VCF file: Here

Download Annotated Variants: ANNOTATED VCF _index
Plant Type: Type I

Bt/Bd ALLELE DETECTION ?

CBDAS LOG-R RATIO

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THCAS LOG-R RATIO

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CBCAS LOG-R RATIO

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PLANT SEX LOG-R RATIO

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SUMMARY OF DELETIONS (THCAS, CBDAS, and CBCAS) AND PLANT SEX

Gene/Plant Sex	Correlation	Call
THCAS	0.42	INTACT
CBDAS	0.98	DELETED
CBCAS	0.24	INTACT
Plant Sex	0.93	Female

VARIANTS (THCAS, CBDAS, and CBCAS)

Gene	HGVS.c	HGVS.p	Annotation	Annotation Impact	Contig	Contig Pos	Ref/Alt	Var Freq
THCAS	c.749C>A	p.Ala250Asp	missense variant	MODERATE	contig741	4417079 _{IGV:Start\|Jump}	G/T	NGS:0.127 C90:0.632	0.127
THCAS	c.424G>A	p.Val142Ile	missense variant	MODERATE	contig741	4417404 _{IGV:Start\|Jump}	C/T	NGS:0.000 C90:0.761
THCAS	c.385G>A	p.Val129Ile	missense variant	MODERATE	contig741	4417443 _{IGV:Start\|Jump}	C/T	NGS:0.000 C90:0.947
THCAS	c.355A>T	p.Met119Leu	missense variant	MODERATE	contig741	4417473 _{IGV:Start\|Jump}	T/A	NGS:0.000 C90:0.962
THCAS	c.187A>C	p.Ile63Leu	missense variant	MODERATE	contig741	4417641 _{IGV:Start\|Jump}	T/G	NGS:0.059 C90:0.679	0.059

VARIANTS (SELECT GENES OF INTEREST)

Gene	HGVS.c	HGVS.p	Annotation	Annotation Impact	Contig	Contig Pos	Ref/Alt	Var Freq
PKSA-3b _UNIPROT	c.298G>A	p.Ala100Thr	missense variant	MODERATE	contig705	2271640 _{IGV:Start\|Jump}	C/T	NGS:0.044 C90:0.177	0.044
EMF1-2 _UNIPROT	c.634G>C	p.Val212Leu	missense variant	MODERATE	contig885	734 _{IGV:Start\|Jump}	G/C	NGS:0.015 C90:0.239	0.015
EMF1-2 _UNIPROT	c.710A>C	p.His237Pro	missense variant	MODERATE	contig885	810 _{IGV:Start\|Jump}	A/C	NGS:0.090 C90:0.474	0.09
EMF1-2 _UNIPROT	c.1384A>C	p.Lys462Gln	missense variant	MODERATE	contig885	2270 _{IGV:Start\|Jump}	A/C	NGS:0.013 C90:0.254	0.013
PHL-2 _UNIPROT	c.44G>A	p.Arg15Lys	missense variant	MODERATE	contig2621	337613 _{IGV:Start\|Jump}	G/A	NGS:0.015 C90:0.167	0.015
PHL-2 _UNIPROT	c.932T>C	p.Leu311Pro	missense variant	MODERATE	contig2621	340210 _{IGV:Start\|Jump}	T/C	NGS:0.039 C90:0.268	0.039
PHL-2 _UNIPROT	c.1057A>G	p.Arg353Gly	missense variant	MODERATE	contig2621	340335 _{IGV:Start\|Jump}	A/G	NGS:0.096 C90:0.555	0.096
PHL-2 _UNIPROT	c.1096G>A	p.Ala366Thr	missense variant	MODERATE	contig2621	340374 _{IGV:Start\|Jump}	G/A	NGS:0.090 C90:0.531	0.09
PHL-2 _UNIPROT	c.2564T>A	p.Phe855Tyr	missense variant	MODERATE	contig2621	342607 _{IGV:Start\|Jump}	T/A	NGS:0.064 C90:0.732	0.064
PHL-2 _UNIPROT	c.2578T>A	p.Leu860Ile	missense variant	MODERATE	contig2621	342621 _{IGV:Start\|Jump}	T/A	NGS:0.068 C90:0.746	0.068
PHL-2 _UNIPROT	c.2624C>T	p.Ser875Phe	missense variant	MODERATE	contig2621	342667 _{IGV:Start\|Jump}	C/T	NGS:0.042 C90:0.268	0.042
PHL-2 _UNIPROT	c.2783G>A	p.Ser928Asn	missense variant	MODERATE	contig2621	342826 _{IGV:Start\|Jump}	G/A	NGS:0.107 C90:0.890	0.107
PHL-2 _UNIPROT	c.2933G>T	p.Arg978Leu	missense variant	MODERATE	contig2621	342976 _{IGV:Start\|Jump}	G/T	NGS:0.048 C90:0.297	0.048
PHL-2 _UNIPROT	c.3209A>G	p.Gln1070Arg	missense variant	MODERATE	contig2621	343252 _{IGV:Start\|Jump}	A/G	NGS:0.103 C90:0.885	0.103
PHL-2 _UNIPROT	c.3467A>G	p.Gln1156Arg	missense variant	MODERATE	contig2621	343510 _{IGV:Start\|Jump}	A/G	NGS:0.064 C90:0.713	0.064
PKSG-4a _UNIPROT	c.1000T>C	p.Tyr334His	missense variant	MODERATE	contig700	1938411 _{IGV:Start\|Jump}	T/C	NGS:0.002 C90:0.804	0.002
PKSG-2a _UNIPROT	c.1117A>G	p.Ile373Val	missense variant	MODERATE	contig700	1944273 _{IGV:Start\|Jump}	T/C	NGS:0.101 C90:0.967	0.101
PKSG-2a _UNIPROT	c.995C>T	p.Ser332Phe	missense variant	MODERATE	contig700	1944395 _{IGV:Start\|Jump}	G/A	NGS:0.015 C90:0.598	0.015
PKSG-2a _UNIPROT	c.224A>G	p.Lys75Arg	missense variant	MODERATE	contig700	1945166 _{IGV:Start\|Jump}	T/C	NGS:0.143 C90:0.962	0.143
PKSG-2b _UNIPROT	c.1117A>G	p.Ile373Val	missense variant	MODERATE	contig700	1950521 _{IGV:Start\|Jump}	T/C	NGS:0.807 C90:0.981	0.807
PKSG-4b _UNIPROT	c.523C>T	p.His175Tyr	missense variant	MODERATE	contig700	2721150 _{IGV:Start\|Jump}	G/A	NGS:0.112 C90:0.325	0.112
PKSG-4b _UNIPROT	c.489delT	p.Phe163fs	frameshift variant	HIGH	contig700	2721183 _{IGV:Start\|Jump}	CA/C	NGS:0.792 C90:0.761	0.792
PKSG-4b _UNIPROT	c.316+2T>A		splice donor variant&intron variant	HIGH	contig700	2723818 _{IGV:Start\|Jump}	A/T	NGS:0.070 C90:0.689	0.07
DXR-2 _UNIPROT	c.431C>G	p.Ala144Gly	missense variant	MODERATE	contig380	287760 _{IGV:Start\|Jump}	G/C	NGS:0.182 C90:0.550	0.182
OAC-2 _UNIPROT	c.220A>G	p.Ile74Val	missense variant	MODERATE	contig931	110019 _{IGV:Start\|Jump}	T/C	NGS:0.011 C90:0.670	0.011
OAC-1 _UNIPROT	c.220A>G	p.Ile74Val	missense variant	MODERATE	contig931	118144 _{IGV:Start\|Jump}	T/C	NGS:0.033 C90:0.670	0.033
ELF3 _UNIPROT	c.358G>A	p.Gly120Arg	missense variant	MODERATE	contig97	242064 _{IGV:Start\|Jump}	G/A	NGS:0.099 C90:0.493	0.099
ELF3 _UNIPROT	c.520A>C	p.Asn174His	missense variant	MODERATE	contig97	242226 _{IGV:Start\|Jump}	A/C	NGS:0.094 C90:0.502	0.094
ELF3 _UNIPROT	c.752G>T	p.Gly251Val	missense variant	MODERATE	contig97	242458 _{IGV:Start\|Jump}	G/T	NGS:0.022 C90:0.139	0.022
ELF3 _UNIPROT	c.812G>C	p.Gly271Ala	missense variant	MODERATE	contig97	242518 _{IGV:Start\|Jump}	G/C	NGS:0.114 C90:0.938	0.114
ELF3 _UNIPROT	c.1230-2_1230-1delAG		splice acceptor variant&intron variant	HIGH	contig97	243676 _{IGV:Start\|Jump}	TAG/T	NGS:0.088 C90:0.450	0.088
ELF3 _UNIPROT	c.1630A>G	p.Thr544Ala	missense variant	MODERATE	contig97	244461 _{IGV:Start\|Jump}	A/G	NGS:0.103 C90:0.545	0.103
ELF3 _UNIPROT	c.1966C>G	p.Pro656Ala	missense variant	MODERATE	contig97	244797 _{IGV:Start\|Jump}	C/G	NGS:0.123 C90:0.632	0.123
ELF3 _UNIPROT	c.2141C>G	p.Pro714Arg	missense variant	MODERATE	contig97	244972 _{IGV:Start\|Jump}	C/G	NGS:0.088 C90:0.335	0.088
ELF3 _UNIPROT	c.2198delG	p.Arg733fs	frameshift variant	HIGH	contig97	245028 _{IGV:Start\|Jump}	CG/C	NGS:0.002 C90:0.612	0.002
aPT1 _UNIPROT	c.406A>G	p.Ile136Val	missense variant	MODERATE	contig121	2839605 _{IGV:Start\|Jump}	A/G	NGS:0.579 C90:0.761	0.579
PHL-1 _UNIPROT	c.2551A>G	p.Thr851Ala	missense variant	MODERATE	contig1439	1487246 _{IGV:Start\|Jump}	T/C	NGS:0.116 C90:0.890	0.116
PHL-1 _UNIPROT	c.1387A>G	p.Thr463Ala	missense variant	MODERATE	contig1439	1489811 _{IGV:Start\|Jump}	T/C	NGS:0.107 C90:0.904	0.107
TFL1 _UNIPROT	c.302-1G>A		splice acceptor variant&intron variant	HIGH	contig1636	520616 _{IGV:Start\|Jump}	C/T	NGS:0.103 C90:0.794	0.103
TFL1 _UNIPROT	c.47_48dupAT	p.Val17fs	frameshift variant	HIGH	contig1636	521258 _{IGV:Start\|Jump}	C/CAT	NGS:0.026 C90:0.211	0.026
HDS-1 _UNIPROT	c.1618A>G	p.Ile540Val	missense variant	MODERATE	contig1891	885936 _{IGV:Start\|Jump}	T/C	NGS:0.099 C90:0.861	0.099
HDS-1 _UNIPROT	c.56C>G	p.Ala19Gly	missense variant	MODERATE	contig1891	889336 _{IGV:Start\|Jump}	G/C	NGS:0.125 C90:0.943	0.125
HDS-1 _UNIPROT	c.35G>A	p.Cys12Tyr	missense variant	MODERATE	contig1891	889357 _{IGV:Start\|Jump}	C/T	NGS:0.094 C90:0.646	0.094
PIE1-2 _UNIPROT	c.6653A>G	p.Asn2218Ser	missense variant	MODERATE	contig1460	1184434 _{IGV:Start\|Jump}	T/C	NGS:0.059 C90:0.928	0.059
PIE1-2 _UNIPROT	c.6636T>G	p.Asp2212Glu	missense variant	MODERATE	contig1460	1184451 _{IGV:Start\|Jump}	A/C	NGS:0.035 C90:0.885	0.035
PIE1-2 _UNIPROT	c.5932A>G	p.Ile1978Val	missense variant	MODERATE	contig1460	1185552 _{IGV:Start\|Jump}	T/C	NGS:0.061 C90:0.268	0.061
PIE1-2 _UNIPROT	c.5132T>C	p.Ile1711Thr	missense variant	MODERATE	contig1460	1186607 _{IGV:Start\|Jump}	A/G	NGS:0.000 C90:0.852
PIE1-2 _UNIPROT	c.2083_2085delGTC	p.Val695del	conservative inframe deletion	MODERATE	contig1460	1189954 _{IGV:Start\|Jump}	GGAC/G	NGS:0.046 C90:0.880	0.046
PIE1-2 _UNIPROT	c.2072A>G	p.His691Arg	missense variant	MODERATE	contig1460	1189968 _{IGV:Start\|Jump}	T/C	NGS:0.046 C90:0.789	0.046
PIE1-2 _UNIPROT	c.1916T>C	p.Val639Ala	missense variant	MODERATE	contig1460	1190124 _{IGV:Start\|Jump}	A/G	NGS:0.004 C90:0.029	0.004
PIE1-2 _UNIPROT	c.1872T>A	p.Asp624Glu	missense variant	MODERATE	contig1460	1190252 _{IGV:Start\|Jump}	A/T	NGS:0.086 C90:0.990	0.086
PIE1-2 _UNIPROT	c.1630G>C	p.Ala544Pro	missense variant	MODERATE	contig1460	1191600 _{IGV:Start\|Jump}	C/G	NGS:0.070 C90:0.933	0.07
PIE1-2 _UNIPROT	c.1156T>G	p.Trp386Gly	missense variant	MODERATE	contig1460	1192242 _{IGV:Start\|Jump}	A/C	NGS:0.009 C90:0.976	0.009
PIE1-2 _UNIPROT	c.1117C>G	p.Gln373Glu	missense variant	MODERATE	contig1460	1192281 _{IGV:Start\|Jump}	G/C	NGS:0.002 C90:0.818	0.002
PIE1-2 _UNIPROT	c.1093G>A	p.Gly365Ser	missense variant	MODERATE	contig1460	1192305 _{IGV:Start\|Jump}	C/T	NGS:0.002 C90:0.986	0.002
PIE1-2 _UNIPROT	c.982G>A	p.Glu328Lys	missense variant	MODERATE	contig1460	1192416 _{IGV:Start\|Jump}	C/T	NGS:0.050 C90:0.976	0.05
PIE1-2 _UNIPROT	c.710C>T	p.Pro237Leu	missense variant	MODERATE	contig1460	1193804 _{IGV:Start\|Jump}	G/A	NGS:0.072 C90:0.866	0.072
PIE1-2 _UNIPROT	c.706T>C	p.Tyr236His	missense variant	MODERATE	contig1460	1193808 _{IGV:Start\|Jump}	A/G	NGS:0.059 C90:0.737	0.059
PIE1-2 _UNIPROT	c.637T>A	p.Ser213Thr	missense variant	MODERATE	contig1460	1194421 _{IGV:Start\|Jump}	A/T	NGS:0.079 C90:0.885	0.079
PIE1-2 _UNIPROT	c.349C>T	p.Pro117Ser	missense variant&splice region variant	MODERATE	contig1460	1195017 _{IGV:Start\|Jump}	G/A	NGS:0.000 C90:0.962
EMF2 _UNIPROT	c.1772A>G	p.Gln591Arg	missense variant	MODERATE	contig954	3059929 _{IGV:Start\|Jump}	A/G	NGS:0.092 C90:0.876	0.092
EMF1-1 _UNIPROT	c.470C>A	p.Ser157Tyr	missense variant	MODERATE	contig883	269959 _{IGV:Start\|Jump}	C/A	NGS:0.013 C90:0.239	0.013
EMF1-1 _UNIPROT	c.605A>T	p.His202Leu	missense variant	MODERATE	contig883	270210 _{IGV:Start\|Jump}	A/T	NGS:0.009 C90:0.230	0.009
FLD _UNIPROT	c.2981T>C	p.Met994Thr	missense variant	MODERATE	contig1450	2044012 _{IGV:Start\|Jump}	A/G	NGS:0.064 C90:0.478	0.064
FLD _UNIPROT	c.2976A>C	p.Gln992His	missense variant	MODERATE	contig1450	2044017 _{IGV:Start\|Jump}	T/G	NGS:0.000 C90:0.153
FLD _UNIPROT	c.2964C>A	p.Asp988Glu	missense variant	MODERATE	contig1450	2044029 _{IGV:Start\|Jump}	G/T	NGS:0.057 C90:0.464	0.057
FLD _UNIPROT	c.2929T>C	p.Phe977Leu	missense variant	MODERATE	contig1450	2044103 _{IGV:Start\|Jump}	A/G	NGS:0.026 C90:0.349	0.026
FLD _UNIPROT	c.125G>A	p.Ser42Asn	missense variant	MODERATE	contig1450	2047909 _{IGV:Start\|Jump}	C/T	NGS:0.037 C90:0.388	0.037
PKSA-3a _UNIPROT	c.298G>A	p.Ala100Thr	missense variant	MODERATE	contig1357	1144811 _{IGV:Start\|Jump}	G/A	NGS:0.000 C90:0.177
PIE1-1 _UNIPROT	c.742T>A	p.Ser248Thr	missense variant	MODERATE	contig1225	2279320 _{IGV:Start\|Jump}	T/A	NGS:0.002 C90:0.890	0.002
PIE1-1 _UNIPROT	c.773A>G	p.Asn258Ser	missense variant&splice region variant	MODERATE	contig1225	2279897 _{IGV:Start\|Jump}	A/G	NGS:0.033 C90:0.895	0.033
PIE1-1 _UNIPROT	c.811T>C	p.Tyr271His	missense variant	MODERATE	contig1225	2279935 _{IGV:Start\|Jump}	T/C	NGS:0.026 C90:0.742	0.026
PIE1-1 _UNIPROT	c.815C>T	p.Pro272Leu	missense variant	MODERATE	contig1225	2279939 _{IGV:Start\|Jump}	C/T	NGS:0.029 C90:0.885	0.029
PIE1-1 _UNIPROT	c.1222C>G	p.Gln408Glu	missense variant	MODERATE	contig1225	2281482 _{IGV:Start\|Jump}	C/G	NGS:0.096 C90:0.852	0.096
PIE1-1 _UNIPROT	c.1394A>G	p.Asp465Gly	missense variant	MODERATE	contig1225	2281654 _{IGV:Start\|Jump}	A/G	NGS:0.007 C90:0.818	0.007
PIE1-1 _UNIPROT	c.1454T>C	p.Val485Ala	missense variant	MODERATE	contig1225	2281714 _{IGV:Start\|Jump}	T/C	NGS:0.000 C90:0.900
PIE1-1 _UNIPROT	c.1548_1549insATG	p.Gln516_Glu517insMet	conservative inframe insertion	MODERATE	contig1225	2281807 _{IGV:Start\|Jump}	A/AGAT	NGS:0.002 C90:0.904	0.002
PIE1-1 _UNIPROT	c.2018T>C	p.Val673Ala	missense variant	MODERATE	contig1225	2283633 _{IGV:Start\|Jump}	T/C	NGS:0.004 C90:0.033	0.004
PIE1-1 _UNIPROT	c.2174A>G	p.His725Arg	missense variant	MODERATE	contig1225	2283789 _{IGV:Start\|Jump}	A/G	NGS:0.000 C90:0.770
PIE1-1 _UNIPROT	c.2185_2187delGTC	p.Val729del	conservative inframe deletion	MODERATE	contig1225	2283796 _{IGV:Start\|Jump}	AGTC/A	NGS:0.000 C90:0.876
PIE1-1 _UNIPROT	c.3869A>C	p.Asn1290Thr	missense variant	MODERATE	contig1225	2285484 _{IGV:Start\|Jump}	A/C	NGS:0.002 C90:0.909	0.002
PIE1-1 _UNIPROT	c.5234T>C	p.Ile1745Thr	missense variant	MODERATE	contig1225	2287152 _{IGV:Start\|Jump}	T/C	NGS:0.000 C90:0.842
PIE1-1 _UNIPROT	c.6041T>C	p.Met2014Thr	missense variant	MODERATE	contig1225	2288214 _{IGV:Start\|Jump}	T/C	NGS:0.000 C90:0.876
PIE1-1 _UNIPROT	c.6738G>T	p.Glu2246Asp	missense variant	MODERATE	contig1225	2289303 _{IGV:Start\|Jump}	G/T	NGS:0.000 C90:0.397

NEAREST GENETIC RELATIVES TO #11 Janis:

#	Relative	Genetic Distance
1	RSP11655-Unknown	0.04
2	RSP11464-Wedding Cake x MAC	4.07
3	RSP11459-Thank You Jerry	4.13
4	RSP11647-Girl Scout Cookies	4.14
5	RSP11579-JL Cross 78	4.2
6	RSP11645-Unknown	4.2
7	RSP11537-JL Cross 36	4.21
8	RSP11261-UP Wendigo	4.23
9	RSP11181-Herijuana	4.35
10	RSP11651-Girl Scout Cookies	4.35
11	RSP11184-Domnesia	4.38
12	RSP11648-Pineapple Haze	4.38
13	RSP11557-JL Cross 56	4.4
14	RSP11578-JL Cross 77	4.42
15	RSP11535-JL Cross 34	4.45
16	RSP11585-JL Cross 84	4.45
17	RSP11649-Girl Scout Cookies	4.46
18	RSP11581-JL Cross 80	4.46
19	RSP11650-Girl Scout Cookies	4.53
20	RSP11526-JL Cross 25	4.54

MOST GENETICALLY DISTANT STRAINS FROM #11 Janis:

#	Strain	Genetic Distance
1	RSP11205-Feral	7.3
2	RSP11208-CS	7.07
3	RSP11203-Fedora 17	6.92
4	RSP11210-Tiborszallasie	6.9
5	RSP11212-80E	6.81
6	RSP11204-Carmagnola USO 31	6.79
7	RSP11206-Feral	6.78
8	RSP11207-Carmaleonte	6.72
9	RSP11213-80E	6.65
10	RSP11211-80E	6.54
11	RSP11209-Eletta Campana	6.47
12	RSP11200-JL 4th Gen 6	6.08
13	RSP11196-JL 3rd Gen Father	6.07
14	RSP11408-Swiss Dream	5.88
15	RSP11271-Unknown- Cherry Wine - 004	5.88
16	RSP11189-Tahoe OG	5.88
17	RSP11462-Goomendaze	5.86
18	RSP11534-JL Cross 33	5.73
19	RSP11190-Red Eye OG	5.72
20	RSP11394-Chematonic Cannatonic x Chemdawg	5.69

NEAREST GENETIC RELATIVES IN PHYLOS DATASET:

Phylos Strain	Number of Overlapping SNPs	Concordance
SRR4448736	86	56

Blockchain Registration Information:

Transaction ID: 70e9a7dc707844757bc0fed1eb76a30669c7203ea834fb1c84c7b1f0ae6a09b7
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