GMO x Zkittlez #43

RSP11976
StrainSEEK Cannabis Certification Report

Accession Date:

April 30, 2021

Summary

GMO x Zkittlez #43 (RSP11976/Happy Valley Ventures) is a genetic Type I plant and its genetics appear rare. The sample's closest relative in the database is Star Dawg (RSP11352/Happy Valley) and it is a potential sibling. The heterozygosity rate is 1.06% which is average (60.3 percentile).

General Information

Strain: GMO x Zkittlez #43
RSP ID: RSP11976
Grower: Happy Valley Ventures
Accession Date: April 30, 2021
Gender: Female
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 1.06
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCASc.998C>Gp.Pro333Argmissense variantMODERATEcontig7414416830

IGV:Start|Jump

G/C

NGS:0.182

C90:0.000

0.182
THCASc.749C>Ap.Ala250Aspmissense variantMODERATEcontig7414417079

IGV:Start|Jump

G/T

NGS:0.127

C90:0.632

0.127



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-4a

UNIPROT

c.1000T>Cp.Tyr334Hismissense variantMODERATEcontig7001938411

IGV:Start|Jump

T/C

NGS:0.002

C90:0.804

0.002
PKSG-2a

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001944238

IGV:Start|Jump

A/T

NGS:0.009

C90:0.880

0.009
PKSG-2a

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001944258

IGV:Start|Jump

G/C

NGS:0.009

C90:0.000

0.009
PKSG-2a

UNIPROT

c.1124G>Cp.Arg375Thrmissense variantMODERATEcontig7001944266

IGV:Start|Jump

C/G

NGS:0.002

C90:0.000

0.002
PKSG-2a

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001944273

IGV:Start|Jump

T/C

NGS:0.101

C90:0.967

0.101
PKSG-2a

UNIPROT

c.1105C>Gp.Pro369Alamissense variantMODERATEcontig7001944285

IGV:Start|Jump

G/C

NGS:0.011

C90:0.000

0.011
PKSG-2a

UNIPROT

c.781T>Ap.Leu261Ilemissense variantMODERATEcontig7001944609

IGV:Start|Jump

A/T

NGS:0.026

C90:0.574

0.026
PKSG-2a

UNIPROT

c.774G>Ap.Met258Ilemissense variantMODERATEcontig7001944616

IGV:Start|Jump

C/T

NGS:0.123

C90:0.000

0.123
PKSG-2a

UNIPROT

c.241G>Ap.Val81Metmissense variantMODERATEcontig7001945149

IGV:Start|Jump

C/T

NGS:0.136

C90:0.000

0.136
PKSG-2a

UNIPROT

c.240T>Gp.Asp80Glumissense variantMODERATEcontig7001945150

IGV:Start|Jump

A/C

NGS:0.136

C90:0.000

0.136
PKSG-2a

UNIPROT

c.230T>Cp.Val77Alamissense variantMODERATEcontig7001945160

IGV:Start|Jump

A/G

NGS:0.114

C90:0.000

0.114
PKSG-2a

UNIPROT

c.224A>Gp.Lys75Argmissense variantMODERATEcontig7001945166

IGV:Start|Jump

T/C

NGS:0.143

C90:0.962

0.143
PKSG-2a

UNIPROT

c.188T>Gp.Ile63Sermissense variantMODERATEcontig7001945202

IGV:Start|Jump

A/C

NGS:0.101

C90:0.000

0.101
PKSG-2a

UNIPROT

c.188T>Ap.Ile63Asnmissense variantMODERATEcontig7001945202

IGV:Start|Jump

A/T

NGS:0.061

C90:0.000

0.061
PKSG-2a

UNIPROT

c.187A>Tp.Ile63Phemissense variantMODERATEcontig7001945203

IGV:Start|Jump

T/A

NGS:0.101

C90:0.000

0.101
PKSG-2a

UNIPROT

c.167C>Gp.Thr56Sermissense variantMODERATEcontig7001945223

IGV:Start|Jump

G/C

NGS:0.075

C90:0.000

0.075
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.774G>Ap.Met258Ilemissense variantMODERATEcontig7001950864

IGV:Start|Jump

C/T

NGS:0.366

C90:0.947

0.366
PKSG-2b

UNIPROT

c.718T>Ap.Phe240Ilemissense variantMODERATEcontig7001950920

IGV:Start|Jump

A/T

NGS:0.114

C90:0.000

0.114
PKSG-2b

UNIPROT

c.241G>Ap.Val81Metmissense variantMODERATEcontig7001951397

IGV:Start|Jump

C/T

NGS:0.154

C90:0.000

0.154
PKSG-2b

UNIPROT

c.240T>Gp.Asp80Glumissense variantMODERATEcontig7001951398

IGV:Start|Jump

A/C

NGS:0.156

C90:0.000

0.156
PKSG-2b

UNIPROT

c.230T>Cp.Val77Alamissense variantMODERATEcontig7001951408

IGV:Start|Jump

A/G

NGS:0.134

C90:0.646

0.134
PKSG-2b

UNIPROT

c.224A>Gp.Lys75Argmissense variantMODERATEcontig7001951414

IGV:Start|Jump

T/C

NGS:0.151

C90:0.957

0.151
PKSG-2b

UNIPROT

c.188T>Gp.Ile63Sermissense variantMODERATEcontig7001951450

IGV:Start|Jump

A/C

NGS:0.118

C90:0.000

0.118
PKSG-2b

UNIPROT

c.188T>Ap.Ile63Asnmissense variantMODERATEcontig7001951450

IGV:Start|Jump

A/T

NGS:0.011

C90:0.000

0.011
PKSG-2b

UNIPROT

c.187A>Tp.Ile63Phemissense variantMODERATEcontig7001951451

IGV:Start|Jump

T/A

NGS:0.116

C90:0.000

0.116
PKSG-2b

UNIPROT

c.167C>Gp.Thr56Sermissense variantMODERATEcontig7001951471

IGV:Start|Jump

G/C

NGS:0.103

C90:0.947

0.103
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.353_354insCCp.Gly119fsframeshift variantHIGHcontig7002721319

IGV:Start|Jump

T/TGG

NGS:0.175

C90:0.000

0.175
DXR-2

UNIPROT

c.1319T>Cp.Ile440Thrmissense variantMODERATEcontig380285250

IGV:Start|Jump

A/G

NGS:0.480

C90:0.000

0.48
DXR-2

UNIPROT

c.431C>Gp.Ala144Glymissense variantMODERATEcontig380287760

IGV:Start|Jump

G/C

NGS:0.182

C90:0.550

0.182
FAD2-2

UNIPROT

c.161T>Ap.Leu54Hismissense variantMODERATEcontig831803208

IGV:Start|Jump

A/T

NGS:0.156

C90:0.000

0.156
aPT4

UNIPROT

c.35A>Cp.Gln12Promissense variantMODERATEcontig1212828691

IGV:Start|Jump

A/C

NGS:0.075

C90:0.000

0.075
aPT4

UNIPROT

c.97T>Cp.Tyr33Hismissense variantMODERATEcontig1212828753

IGV:Start|Jump

T/C

NGS:0.439

C90:0.000

0.439
aPT4

UNIPROT

c.153A>Cp.Lys51Asnmissense variantMODERATEcontig1212828809

IGV:Start|Jump

A/C

NGS:0.375

C90:0.000

0.375
aPT4

UNIPROT

c.775delTp.Tyr259fsframeshift variantHIGHcontig1212831380

IGV:Start|Jump

AT/A

NGS:0.224

C90:0.000

0.224
aPT4

UNIPROT

c.1168T>Cp.Tyr390Hismissense variantMODERATEcontig1212833503

IGV:Start|Jump

T/C

NGS:0.546

C90:0.000

0.546
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
aPT1

UNIPROT

c.629C>Tp.Thr210Ilemissense variantMODERATEcontig1212840237

IGV:Start|Jump

C/T

NGS:0.561

C90:0.598

0.561
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
HDS-2

UNIPROT

c.127T>Gp.Ser43Alamissense variantMODERATEcontig951989794

IGV:Start|Jump

T/G

NGS:0.721

C90:0.000

0.721


NEAREST GENETIC RELATIVES TO GMO x Zkittlez #43:
# Relative Genetic Distance
1 RSP11352-Star Dawg 4.81
2 RSP11341-Garlic 5.8
3 RSP11265-Pure Power Plant 6.29
4 RSP11741-Fatso 6.32
5 RSP11640-Peanut Butter Breath 6.7
6 RSP11623-Mother's Milk No 31 6.88
7 RSP11354-Dominion Skunk 7.16
8 RSP11231-Gorilla Cookies 7.2
9 RSP11628-Right Mark 7.23
10 RSP11242-MENDO BREATH 7.24
11 RSP11126-RKM-2018-034 7.38
12 RSP11343-Sour D 7.48
13 RSP11353-Rugburn OG 7.48
14 RSP11638-Black Triangle 7.5
15 RSP11093-RKM-2018-002 7.53
16 RSP11095-RKM-2018-004 7.55
17 RSP10243-East Coast Sour Diesel 7.55
18 RSP11184-Domnesia 7.62
19 RSP11487-NSPM x NSPM 7.66
20 RSP11455-Noetic OG 7.67
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11126-RKM-2018-034 7.53
2 RSP10684-Blueberry Cheesecake 7.75
3 RSP11096-RKM-2018-005 8.06
4 RSP11093-RKM-2018-002 8.09
5 RSP10837-Skywalker OG 8.41
6 RSP10988-The Gift 9.1
7 RSP11124-RKM-2018-032 9.18
8 RSP11073-Pie Hoe 9.3
9 RSP11050-Hermaphrodite ResearchSample2 9.41
10 RSP11118-RKM-2018-026 9.55
11 RSP11002-CST 9.65
12 RSP11048-Gold Cracker 9.93
13 RSP11125-RKM-2018-033 9.99
14 RSP11049-Hermaphrodite Research Sample1 10.17
15 RSP11014-Durban Poison 10.29
16 RSP10991-Golden Goat 2 10.3
17 RSP10680-Blueberry Cheesecake 10.32
18 RSP10755-Recon 10.47
19 RSP11111-RKM-2018-019 10.5
20 RSP11100-RKM-2018-009 10.54
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR8349028 81 55
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495244 10 10

Blockchain Registration Information:

Transaction ID: 3effc82be0f8e64f95ab11507acefd8923217eb9c27a88bf9f0fd47a659f7bc6
Stamping Certificate: PDF
SHASUM Hash: 679f41154cb2c7d979efb894ac1637f928595b8a7048444a81c4ed8b2e323cee