Monoica

RSP10241
StrainSEEK Cannabis Certification Report

Accession Date:

May 13, 2016

General Information

Strain: Monoica
Sample: Monoica-2
RSP ID: RSP10241
Grower: CSU
Accession Date: May 13, 2016
Gender: Female
Strain Seek Version: V2


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Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 1.18
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type III

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
CBDASc.221C>Gp.Thr74Sermissense variantMODERATEcontig17722082447

IGV:Start|Jump

C/G

NGS:0.136

C90:0.057

0.136
CBDASc.1420A>Cp.Lys474Glnmissense variantMODERATEcontig17722083646

IGV:Start|Jump

A/C

NGS:0.132

C90:0.813

0.132



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-4a

UNIPROT

c.261_264dupGTACp.Met89fsframeshift variantHIGHcontig7001937671

IGV:Start|Jump

A/AGTAC

NGS:0.004

C90:0.000

0.004
PKSG-4a

UNIPROT

c.617A>Gp.Tyr206Cysmissense variantMODERATEcontig7001938028

IGV:Start|Jump

A/G

NGS:0.075

C90:0.000

0.075
PKSG-4a

UNIPROT

c.626_628delATAp.Asn209deldisruptive inframe deletionMODERATEcontig7001938032

IGV:Start|Jump

CAAT/C

NGS:0.075

C90:0.000

0.075
PKSG-4a

UNIPROT

c.1191_1193delTTAp.Tyr398deldisruptive inframe deletionMODERATEcontig7001938600

IGV:Start|Jump

AATT/A

NGS:0.167

C90:0.000

0.167
PKSG-2a

UNIPROT

c.948T>Gp.Asp316Glumissense variantMODERATEcontig7001944442

IGV:Start|Jump

A/C

NGS:0.079

C90:0.000

0.079
PKSG-2a

UNIPROT

c.945T>Gp.Ser315Argmissense variantMODERATEcontig7001944445

IGV:Start|Jump

A/C

NGS:0.079

C90:0.000

0.079
PKSG-2a

UNIPROT

c.944G>Ap.Ser315Asnmissense variantMODERATEcontig7001944446

IGV:Start|Jump

C/T

NGS:0.079

C90:0.000

0.079
PKSG-2a

UNIPROT

c.934C>Gp.His312Aspmissense variantMODERATEcontig7001944456

IGV:Start|Jump

G/C

NGS:0.070

C90:0.000

0.07
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2b

UNIPROT

c.67A>Tp.Ile23Phemissense variantMODERATEcontig7001951815

IGV:Start|Jump

T/A

NGS:0.033

C90:0.325

0.033
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
aPT4

UNIPROT

c.235_236delGTp.Val79fsframeshift variantHIGHcontig1212829030

IGV:Start|Jump

ATG/A

NGS:0.417

C90:0.000

0.417
aPT4

UNIPROT

c.238delTp.Ser80fsframeshift variantHIGHcontig1212829034

IGV:Start|Jump

AT/A

NGS:0.421

C90:0.000

0.421
aPT4

UNIPROT

c.517A>Tp.Ile173Leumissense variant&splice region variantMODERATEcontig1212830795

IGV:Start|Jump

A/T

NGS:0.022

C90:0.000

0.022
aPT4

UNIPROT

c.757G>Tp.Val253Leumissense variantMODERATEcontig1212831364

IGV:Start|Jump

G/T

NGS:0.039

C90:0.000

0.039
aPT4

UNIPROT

c.1168T>Cp.Tyr390Hismissense variantMODERATEcontig1212833503

IGV:Start|Jump

T/C

NGS:0.546

C90:0.000

0.546
aPT1

UNIPROT

c.95_97delGTTp.Cys32deldisruptive inframe deletionMODERATEcontig1212835800

IGV:Start|Jump

ATGT/A

NGS:0.118

C90:0.311

0.118
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
aPT1

UNIPROT

c.727G>Tp.Glu243*stop gainedHIGHcontig1212841362

IGV:Start|Jump

G/T

NGS:0.127

C90:0.100

0.127
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
HDS-2

UNIPROT

c.679G>Cp.Gly227Argmissense variantMODERATEcontig951990632

IGV:Start|Jump

G/C

NGS:0.037

C90:0.000

0.037


NEAREST GENETIC RELATIVES TO Monoica:
# Relative Genetic Distance
1 RSP10056-Santhica27 5.32
2 RSP11046-Santhica27 5.6
3 RSP10664-Futura 75 5.67
4 RSP10658-Lovrin 5.68
5 RSP10983-USO 31 5.69
6 RSP10665-Santhica 27 5.69
7 RSP11047-Santhica27 5.8
8 RSP10233-USO31 5.85
9 RSP10981-USO 31 6.04
10 RSP10661-Fedora 17 6.23
11 RSP10659-Tisza 6.27
12 RSP11203-Fedora 17 6.28
13 RSP10235-Diana 6.29
14 RSP11052-KYRG-151 6.51
15 RSP10668-Ivory 6.58
16 RSP10667-Tygra 6.59
17 RSP11044-Tisza 6.77
18 RSP10978-Carmagnola 6.79
19 RSP11204-Carmagnola USO 31 6.82
20 RSP11045-Tisza 6.89
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11047-Santhica27 5.61
2 RSP10658-Lovrin 5.68
3 RSP10664-Futura 75 5.75
4 RSP10981-USO 31 5.87
5 RSP10661-Fedora 17 5.96
6 RSP10659-Tisza 6.33
7 RSP10667-Tygra 6.48
8 RSP10668-Ivory 6.55
9 RSP11044-Tisza 6.76
10 RSP10979-Carmagnola 7.07
11 RSP11037-Carmagnola 7.38
12 RSP11054-Kyrgyz Gold 7.39
13 RSP11051-KYRG-11 7.46
14 RSP10890-Feral 7.68
15 RSP10653-Jiangji 7.73
16 RSP11050-Hermaphrodite ResearchSample2 9.07
17 RSP11000-Liberty Haze 9.08
18 RSP10755-Recon 9.08
19 RSP11121-RKM-2018-029 9.21
20 RSP10997-Kimbo Slice 9.58
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR4450089 113 81
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495233 17 15

Blockchain Registration Information:

Transaction ID: 413a5ce57542e7fbb20d4a69ef0a751998e2477d955b29e258747c06ec9c8e50
Stamping Certificate: PDF
SHASUM Hash: ef0d19fb06464992023403e3ee5a71eeb9703652d78382fae491ca5f5f5b74a2