Cheese

RSP10460
StrainSEEK Cannabis Certification Report

Accession Date:

October 31, 2016

General Information

Strain: Cheese
RSP ID: RSP10460
Grower: CoffeShop 137
Accession Date: October 31, 2016
Gender: -
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 1.46
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579


NEAREST GENETIC RELATIVES TO Cheese:
# Relative Genetic Distance
1 RSP11094-RKM-2018-003 1.13
2 RSP10603-Black Jack 4.59
3 RSP10763-Serious Happiness 4.62
4 RSP11011-Super Blue Dream 4.75
5 RSP11010-Blue Dream 4.84
6 RSP11346-BLACK JACK 4.99
7 RSP10996-Durban Poison 1 5.1
8 RSP11108-RKM-2018-016 5.13
9 RSP11117-RKM-2018-025 5.2
10 RSP11243-Doug's Varin 5.31
11 RSP11017-Blue Dream 5.42
12 RSP10990-Italian Kiss 5.44
13 RSP11014-Durban Poison 5.52
14 RSP11112-RKM-2018-020 5.54
15 RSP10998-Durban Poison 5.54
16 RSP11119-RKM-2018-027 5.59
17 RSP11122-RKM-2018-030 5.6
18 RSP11013-Durban Poison 1 5.61
19 RSP11034-Italian Kiss 5.68
20 RSP11004-Blue Dream 5.76
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11094-RKM-2018-003 1.34
2 RSP11014-Durban Poison 5.3
3 RSP11112-RKM-2018-020 5.49
4 RSP11119-RKM-2018-027 5.58
5 RSP11034-Italian Kiss 5.97
6 RSP11048-Gold Cracker 6
7 RSP11120-RKM-2018-028 6.02
8 RSP11002-CST 6.08
9 RSP11115-RKM-2018-023 6.36
10 RSP10991-Golden Goat 2 6.77
11 RSP11097-RKM-2018-006 6.79
12 RSP10105-QUEEN JESUS 6.8
13 RSP11033-Blue Dream 6.82
14 RSP10684-Blueberry Cheesecake 6.89
15 RSP11049-Hermaphrodite Research Sample1 7.02
16 RSP11110-RKM-2018-018 7.15
17 RSP10989-UP Sunrise 7.18
18 RSP11038-Skunk 18 7.18
19 RSP11000-Liberty Haze 7.27
20 RSP11050-Hermaphrodite ResearchSample2 7.39
MOST GENETICALLY DISTANT STRAINS FROM Cheese:
# Strain Genetic Distance
1 RSP11323-Cherry Blossom 12.89
2 RSP11314-Cherry Blossom 12.19
3 RSP11213-80E 11.96
4 RSP11205-Feral 11.78
5 RSP11333-Cherry Blossom 11.75
6 RSP11317-Cherry Blossom 11.72
7 RSP11211-80E 11.56
8 RSP11311-Cherry Blossom 11.54
9 RSP11190-Red Eye OG 11.53
10 RSP11328-Cherry Blossom 11.39
11 RSP11318-Cherry Blossom 11.36
12 RSP11206-Feral 11.13
13 RSP11334-Cherry Blossom 11.12
14 RSP11210-Tiborszallasie 11.08
15 RSP11306-Cherry Blossom 11.07
16 RSP11212-80E 11.02
17 RSP11208-CS 11.02
18 RSP11330-Cherry Blossom 10.98
19 RSP10892-Feral 10.83
20 RSP11274-Cherry Blossom 10.81
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR4448559 72 70
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495213 7 7

Blockchain Registration Information:

Transaction ID: 2820ae77d6a189c413a95c5065b47352deae6e1ab0ff9618c945a22800703dde
Stamping Certificate: PDF
SHASUM Hash: 5f79636e25d08064ac7abe8f9ec01259385e693fa29914279d3a9c8274f3a4c6