Recon

RSP10755
StrainSEEK Cannabis Certification Report

Accession Date:

March 14, 2017

General Information

Strain: Recon
RSP ID: RSP10755
Grower: DNA Genetics
Accession Date: March 14, 2017
Gender: Female
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 1.15
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCASc.1229G>Ap.Gly410Glumissense variantMODERATEcontig7414416599

IGV:Start|Jump

C/T

NGS:0.039

C90:0.000

0.039



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.948T>Gp.Asp316Glumissense variantMODERATEcontig7001950690

IGV:Start|Jump

A/C

NGS:0.456

C90:0.000

0.456
PKSG-2b

UNIPROT

c.945T>Gp.Ser315Argmissense variantMODERATEcontig7001950693

IGV:Start|Jump

A/C

NGS:0.454

C90:0.000

0.454
PKSG-2b

UNIPROT

c.944G>Ap.Ser315Asnmissense variantMODERATEcontig7001950694

IGV:Start|Jump

C/T

NGS:0.445

C90:0.000

0.445
PKSG-2b

UNIPROT

c.934C>Gp.His312Aspmissense variantMODERATEcontig7001950704

IGV:Start|Jump

G/C

NGS:0.410

C90:0.000

0.41
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-2b

UNIPROT

c.-2_1dupATAstart lost&conservative inframe insertionHIGHcontig7001951880

IGV:Start|Jump

A/ATAT

NGS:0.410

C90:0.000

0.41
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
PKSG-4b

UNIPROT

c.419A>Gp.Asp140Glymissense variantMODERATEcontig7002721254

IGV:Start|Jump

T/C

NGS:0.430

C90:0.440

0.43
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579


NEAREST GENETIC RELATIVES TO Recon:
# Relative Genetic Distance
1 RSP11243-Doug's Varin 5.84
2 RSP10763-Serious Happiness 6.28
3 RSP11337-White Label 2 6.38
4 RSP11356-Strawberry Cough 6.83
5 RSP11011-Super Blue Dream 6.83
6 RSP11134-Cbot-2019-006 6.85
7 RSP11004-Blue Dream 6.96
8 RSP10996-Durban Poison 1 6.97
9 RSP11153-JL 4th Gen 7 6.99
10 RSP11258-UP All Day Jay 7.03
11 RSP11000-Liberty Haze 7.05
12 RSP11041-Gold Cracker 7.08
13 RSP10684-Blueberry Cheesecake 7.1
14 RSP11184-Domnesia 7.11
15 RSP11014-Durban Poison 7.12
16 RSP11363-Whitey 7.17
17 RSP10946-Liberty Haze 7.17
18 RSP11017-Blue Dream 7.22
19 RSP10603-Black Jack 7.23
20 RSP11048-Gold Cracker 7.24
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11000-Liberty Haze 6.54
2 RSP11134-Cbot-2019-006 6.75
3 RSP10997-Kimbo Slice 7.09
4 RSP10684-Blueberry Cheesecake 7.28
5 RSP11014-Durban Poison 7.3
6 RSP11114-RKM-2018-022 7.33
7 RSP11048-Gold Cracker 7.36
8 RSP10991-Golden Goat 2 7.55
9 RSP11123-RKM-2018-031 7.6
10 RSP11050-Hermaphrodite ResearchSample2 7.69
11 RSP10988-The Gift 7.69
12 RSP11002-CST 7.8
13 RSP11073-Pie Hoe 7.89
14 RSP11034-Italian Kiss 8.02
15 RSP11111-RKM-2018-019 8.03
16 RSP11119-RKM-2018-027 8.03
17 RSP11121-RKM-2018-029 8.16
18 RSP10667-Tygra 8.19
19 RSP11112-RKM-2018-020 8.2
20 RSP10653-Jiangji 8.24
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR4448289 105 69

Blockchain Registration Information:

Transaction ID: 319e22373ec7eadecd67cd200eab05fde7d75f2721b93a927bfbc719b39d7e8b
Stamping Certificate: PDF
SHASUM Hash: aad0f0a734b315f9118dcdda212473005a14074617a39c8ae3ec9b2058ef8c20