Feral

RSP10890
StrainSEEK Cannabis Certification Report

Accession Date:

May 4, 2017

General Information

Strain: Feral
Sample: Merino_S_10_CSU
RSP ID: RSP10890
Grower: John McKay-Colorado State University
Accession Date: May 4, 2017
Gender: Female
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 1.07
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type III

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
CBDASc.1420A>Cp.Lys474Glnmissense variantMODERATEcontig17722083646

IGV:Start|Jump

A/C

NGS:0.132

C90:0.813

0.132



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
GPPs1

UNIPROT

c.160A>Gp.Lys54Glumissense variantMODERATEcontig676168409

IGV:Start|Jump

A/G

NGS:0.026

C90:0.000

0.026
PKSG-4a

UNIPROT

c.37C>Gp.Gln13Glumissense variantMODERATEcontig7001936734

IGV:Start|Jump

C/G

NGS:0.031

C90:0.000

0.031
PKSG-4a

UNIPROT

c.493G>Ap.Gly165Sermissense variantMODERATEcontig7001937904

IGV:Start|Jump

G/A

NGS:0.103

C90:0.000

0.103
PKSG-4a

UNIPROT

c.1188_1190delCAAp.Asn397deldisruptive inframe deletionMODERATEcontig7001938598

IGV:Start|Jump

CCAA/C

NGS:0.002

C90:0.000

0.002
PKSG-4a

UNIPROT

c.1192T>Ap.Tyr398Asnmissense variantMODERATEcontig7001938603

IGV:Start|Jump

T/A

NGS:0.002

C90:0.000

0.002
PKSG-2a

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001944273

IGV:Start|Jump

T/C

NGS:0.101

C90:0.967

0.101
PKSG-2a

UNIPROT

c.948T>Gp.Asp316Glumissense variantMODERATEcontig7001944442

IGV:Start|Jump

A/C

NGS:0.079

C90:0.000

0.079
PKSG-2a

UNIPROT

c.945T>Gp.Ser315Argmissense variantMODERATEcontig7001944445

IGV:Start|Jump

A/C

NGS:0.079

C90:0.000

0.079
PKSG-2a

UNIPROT

c.944G>Ap.Ser315Asnmissense variantMODERATEcontig7001944446

IGV:Start|Jump

C/T

NGS:0.079

C90:0.000

0.079
PKSG-2a

UNIPROT

c.934C>Gp.His312Aspmissense variantMODERATEcontig7001944456

IGV:Start|Jump

G/C

NGS:0.070

C90:0.000

0.07
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.67A>Tp.Ile23Phemissense variantMODERATEcontig7001951815

IGV:Start|Jump

T/A

NGS:0.033

C90:0.325

0.033
PKSG-4b

UNIPROT

c.544G>Tp.Gly182Trpmissense variantMODERATEcontig7002721129

IGV:Start|Jump

C/A

NGS:0.055

C90:0.000

0.055
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.353_354insCCp.Gly119fsframeshift variantHIGHcontig7002721319

IGV:Start|Jump

T/TGG

NGS:0.175

C90:0.000

0.175
PKSG-4b

UNIPROT

c.338G>Ap.Gly113Glumissense variantMODERATEcontig7002721335

IGV:Start|Jump

C/T

NGS:0.046

C90:0.000

0.046
DXR-2

UNIPROT

c.1319T>Cp.Ile440Thrmissense variantMODERATEcontig380285250

IGV:Start|Jump

A/G

NGS:0.480

C90:0.000

0.48
aPT4

UNIPROT

c.80A>Gp.Lys27Argmissense variantMODERATEcontig1212828736

IGV:Start|Jump

A/G

NGS:0.061

C90:0.000

0.061
aPT4

UNIPROT

c.97T>Cp.Tyr33Hismissense variantMODERATEcontig1212828753

IGV:Start|Jump

T/C

NGS:0.439

C90:0.000

0.439
aPT4

UNIPROT

c.153A>Cp.Lys51Asnmissense variantMODERATEcontig1212828809

IGV:Start|Jump

A/C

NGS:0.375

C90:0.000

0.375
aPT4

UNIPROT

c.235_236delGTp.Val79fsframeshift variantHIGHcontig1212829030

IGV:Start|Jump

ATG/A

NGS:0.417

C90:0.000

0.417
aPT4

UNIPROT

c.238delTp.Ser80fsframeshift variantHIGHcontig1212829034

IGV:Start|Jump

AT/A

NGS:0.421

C90:0.000

0.421
aPT4

UNIPROT

c.1168T>Cp.Tyr390Hismissense variantMODERATEcontig1212833503

IGV:Start|Jump

T/C

NGS:0.546

C90:0.000

0.546
aPT1

UNIPROT

c.95_97delGTTp.Cys32deldisruptive inframe deletionMODERATEcontig1212835800

IGV:Start|Jump

ATGT/A

NGS:0.118

C90:0.311

0.118
aPT1

UNIPROT

c.160A>Cp.Thr54Promissense variantMODERATEcontig1212835867

IGV:Start|Jump

A/C

NGS:0.086

C90:0.048

0.086
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
aPT1

UNIPROT

c.670T>Ap.Ser224Thrmissense variantMODERATEcontig1212840278

IGV:Start|Jump

T/A

NGS:0.077

C90:0.000

0.077
aPT1

UNIPROT

c.727G>Tp.Glu243*stop gainedHIGHcontig1212841362

IGV:Start|Jump

G/T

NGS:0.127

C90:0.100

0.127
aPT1

UNIPROT

c.864C>Gp.Asn288Lysmissense variantMODERATEcontig1212842407

IGV:Start|Jump

C/G

NGS:0.075

C90:0.062

0.075
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805


NEAREST GENETIC RELATIVES TO Feral:
# Relative Genetic Distance
1 RSP10891-Feral 4.92
2 RSP10892-Feral 5.08
3 RSP11205-Feral 5.25
4 RSP10978-Carmagnola 6.58
5 RSP10976-Carmagnola 6.63
6 RSP11044-Tisza 6.67
7 RSP11039-Carmagnola 6.68
8 RSP11037-Carmagnola 6.75
9 RSP10982-Carmagnola 6.77
10 RSP10977-Carmagnola 6.8
11 RSP11045-Tisza 6.83
12 RSP11206-Feral 6.93
13 RSP11053-KYRG-21 7
14 RSP10980-Carmagnola 7.03
15 RSP10659-Tisza 7.1
16 RSP10668-Ivory 7.12
17 RSP10979-Carmagnola 7.13
18 RSP10658-Lovrin 7.19
19 RSP10235-Diana 7.24
20 RSP10655-Carmagnola 7.27
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11044-Tisza 6.58
2 RSP11037-Carmagnola 7.06
3 RSP10659-Tisza 7.11
4 RSP10658-Lovrin 7.25
5 RSP10979-Carmagnola 7.29
6 RSP10661-Fedora 17 7.3
7 RSP10668-Ivory 7.46
8 RSP10664-Futura 75 7.49
9 RSP10981-USO 31 7.61
10 RSP11054-Kyrgyz Gold 7.66
11 RSP10241-Monoica 7.68
12 RSP10653-Jiangji 7.8
13 RSP11047-Santhica27 7.85
14 RSP11051-KYRG-11 7.88
15 RSP10667-Tygra 7.92
16 RSP10997-Kimbo Slice 9.01
17 RSP11121-RKM-2018-029 9.18
18 RSP10755-Recon 9.47
19 RSP11002-CST 9.71
20 RSP11050-Hermaphrodite ResearchSample2 9.82
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR4450098 105 65

Blockchain Registration Information:

Transaction ID: 4dd249199888858d444a2d66126244dbe82126ce81251b34351365124bb10313
Stamping Certificate: PDF
SHASUM Hash: 105f22ccf92e1fd13af9b3aec07c1fc94115b99333826ccb3b0d5f684392a58d