USO 31

RSP10983
StrainSEEK Cannabis Certification Report

Accession Date:

July 17, 2017

General Information

Strain: USO 31
Sample: USO31_1_1_CSU
RSP ID: RSP10983
Grower: John McKay-Colorado State University
Accession Date: July 17, 2017
Gender: Hermaphrodite
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 1.09
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type III

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
CBDASc.221C>Gp.Thr74Sermissense variantMODERATEcontig17722082447

IGV:Start|Jump

C/G

NGS:0.136

C90:0.057

0.136



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.948T>Gp.Asp316Glumissense variantMODERATEcontig7001950690

IGV:Start|Jump

A/C

NGS:0.456

C90:0.000

0.456
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
aPT1

UNIPROT

c.95_97delGTTp.Cys32deldisruptive inframe deletionMODERATEcontig1212835800

IGV:Start|Jump

ATGT/A

NGS:0.118

C90:0.311

0.118
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
HDS-2

UNIPROT

c.679G>Cp.Gly227Argmissense variantMODERATEcontig951990632

IGV:Start|Jump

G/C

NGS:0.037

C90:0.000

0.037


NEAREST GENETIC RELATIVES TO USO 31:
# Relative Genetic Distance
1 RSP10981-USO 31 0.19
2 RSP10658-Lovrin 4.07
3 RSP11204-Carmagnola USO 31 4.18
4 RSP10233-USO31 4.51
5 RSP10661-Fedora 17 5.17
6 RSP11046-Santhica27 5.37
7 RSP10056-Santhica27 5.4
8 RSP11047-Santhica27 5.44
9 RSP11203-Fedora 17 5.5
10 RSP10235-Diana 5.56
11 RSP10667-Tygra 5.59
12 RSP10668-Ivory 5.66
13 RSP10241-Monoica 5.69
14 RSP10664-Futura 75 5.76
15 RSP10665-Santhica 27 5.76
16 RSP11052-KYRG-151 6.39
17 RSP10659-Tisza 6.4
18 RSP10982-Carmagnola 6.45
19 RSP11037-Carmagnola 6.63
20 RSP10977-Carmagnola 6.64
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP10981-USO 31 0.18
2 RSP10658-Lovrin 4.2
3 RSP10661-Fedora 17 5.2
4 RSP11047-Santhica27 5.31
5 RSP10668-Ivory 5.49
6 RSP10241-Monoica 5.62
7 RSP10664-Futura 75 5.65
8 RSP10667-Tygra 5.72
9 RSP10659-Tisza 6.31
10 RSP11037-Carmagnola 6.79
11 RSP11044-Tisza 6.81
12 RSP11051-KYRG-11 7.09
13 RSP10979-Carmagnola 7.26
14 RSP11054-Kyrgyz Gold 7.31
15 RSP10890-Feral 7.48
16 RSP10653-Jiangji 7.88
17 RSP11121-RKM-2018-029 8.61
18 RSP10755-Recon 9.1
19 RSP10997-Kimbo Slice 9.11
20 RSP11000-Liberty Haze 9.36
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR4450090 117 87
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495156 7 6

Blockchain Registration Information:

Transaction ID: aa2241bed437c94cbf06b5a718c45487bc25c2124a3235800e3a9ffa9b8db3c5
Stamping Certificate: PDF
SHASUM Hash: 7772136e8bbb05033c7e1f4185e4766019378ad19913f564cb463d5655733e9a