Blue Dream

RSP 11008

Grower: CW NV Cultivators

General Information

Sample Name
F20160920-02-17_01FEB2017
Accession Date
September 17, 2017
Reported Plant Sex
unknown

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

THC + THCA
25.333%
CBD + CBDA
0.112%
THCV + THCVA
0.%
CBC + CBCA
n/a
CBG + CBGA
0.301%
CBN + CBNA
0.086%

Terpenoids

α-Bisabolol
0.003%
Borneol
n/a
Camphene
0.004%
Carene
0.001%
Caryophyllene oxide
0.002%
β-Caryophyllene
0.061%
Fenchol
n/a
Geraniol
0.%
α-Humulene
0.068%
Limonene
0.033%
Linalool
0.022%
Myrcene
0.269%
α-Phellandrene
n/a
Terpinolene
0.001%
α-Terpineol
n/a
α-Terpinene
0.%
γ-Terpinene
0.001%
Total Nerolidol
0.006%
Total Ocimene
0.004%
α-Pinene
0.277%
β-Pinene
0.107%

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.74%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0376
male female RSP11008

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.187A>C p.Ile63Leu missense variant moderate contig741 4417641

IGV: Start, Jump

T/G
NGS:
0.059
C90:
0.679

Variants (Select Genes of Interest)

PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448365
Overlapping SNPs:
77
Concordance:
74

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495238
Overlapping SNPs:
10
Concordance:
10

Blockchain Registration Information

Transaction ID
447e919196c6445af39c0d7a4c3811d87453156d25783ea50223e83d81a7da44
Stamping Certificate
Download PDF (856.2 KB)
SHASUM Hash
1dbc884cd93e6e86858c5fdc69a5436886fab3cf0f385d89524acc3bd0f10bb2
QR code for RSP11008

Kannapedia uses cookies

By clicking Allow All, you agree to the storing of cookies on your device to enhance site navigation, analyze site usage, and assist in our marketing efforts.

Customize Settings