Danny Noonan

RSP11070
StrainSEEK Cannabis Certification Report

Accession Date:

May 7, 2018

General Information

Strain: Danny Noonan
RSP ID: RSP11070
Grower: Brian McKernan
Accession Date: May 7, 2018
Gender: -
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 0.65
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type III

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-2b

UNIPROT

c.-2_1dupATAstart lost&conservative inframe insertionHIGHcontig7001951880

IGV:Start|Jump

A/ATAT

NGS:0.410

C90:0.000

0.41
aPT1

UNIPROT

c.629C>Tp.Thr210Ilemissense variantMODERATEcontig1212840237

IGV:Start|Jump

C/T

NGS:0.561

C90:0.598

0.561
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805


NEAREST GENETIC RELATIVES TO Danny Noonan:
# Relative Genetic Distance
1 RSP11149-TI 5.43
2 RSP11351-T S A G E 7.5
3 RSP11095-RKM-2018-004 7.99
4 RSP11130-Cbot-2019-002 8.13
5 RSP11096-RKM-2018-005 8.14
6 RSP11132-Cbot-2019-004 8.23
7 RSP11017-Blue Dream 8.23
8 RSP11343-Sour D 8.27
9 RSP11183-Sour Tsunami x Cataract Ku 8.33
10 RSP10105-QUEEN JESUS 8.35
11 RSP11011-Super Blue Dream 8.35
12 RSP10999-Miss X 8.37
13 RSP11265-Pure Power Plant 8.57
14 RSP11118-RKM-2018-026 8.59
15 RSP11348-JABBA S STASH 8.64
16 RSP11289-Queen Dream 8.71
17 RSP11093-RKM-2018-002 8.71
18 RSP11277-Queen Dream CBG 8.71
19 RSP11229-Lemon Skunk 8.73
20 RSP11280-Queen Dream CBG 8.73
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11132-Cbot-2019-004 8.17
2 RSP11096-RKM-2018-005 8.33
3 RSP10105-QUEEN JESUS 8.44
4 RSP11110-RKM-2018-018 8.66
5 RSP11126-RKM-2018-034 8.74
6 RSP11118-RKM-2018-026 8.8
7 RSP11120-RKM-2018-028 8.86
8 RSP11100-RKM-2018-009 8.94
9 RSP11112-RKM-2018-020 8.95
10 RSP10684-Blueberry Cheesecake 8.95
11 RSP11073-Pie Hoe 9.07
12 RSP11050-Hermaphrodite ResearchSample2 9.14
13 RSP10989-UP Sunrise 9.15
14 RSP11093-RKM-2018-002 9.24
15 RSP11033-Blue Dream 9.29
16 RSP11049-Hermaphrodite Research Sample1 9.33
17 RSP11034-Italian Kiss 9.42
18 RSP10551-Sour Raspberry 9.49
19 RSP10680-Blueberry Cheesecake 9.52
20 RSP11111-RKM-2018-019 9.54
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR8349127 98 95
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495157 8 6

Blockchain Registration Information:

Transaction ID: d005841e4ff50fd5ffa92ee2b07bb492a7fb902a28ff42060c1143f0757d30b6
Stamping Certificate: PDF
SHASUM Hash: d02a8006430b7c6be59febc26f5623159f524bc3ddf50972407ddebb3eab33f7