RKM-2018-002

RSP11093
StrainSEEK Cannabis Certification Report

Accession Date:

September 7, 2018

General Information

Strain: RKM-2018-002
RSP ID: RSP11093
Grower: R-Kiem Seeds
Accession Date: September 7, 2018
Gender: Female
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 0.77
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
PKSG-4b

UNIPROT

c.419A>Gp.Asp140Glymissense variantMODERATEcontig7002721254

IGV:Start|Jump

T/C

NGS:0.430

C90:0.440

0.43
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579


NEAREST GENETIC RELATIVES TO RKM-2018-002:
# Relative Genetic Distance
1 RSP11343-Sour D 3.03
2 RSP10243-East Coast Sour Diesel 3.59
3 RSP11225-New York City Deisel 3.79
4 RSP11241-501st OG 3.94
5 RSP11191-Super Sour Diesel 4.3
6 RSP11352-Star Dawg 4.35
7 RSP11103-RKM-2018-012 4.52
8 RSP11353-Rugburn OG 5.05
9 RSP11185-Chem 91 5.26
10 RSP11266-Abacus 5.38
11 RSP11095-RKM-2018-004 5.42
12 RSP11096-RKM-2018-005 5.64
13 RSP11124-RKM-2018-032 5.89
14 RSP11109-RKM-2018-017 5.93
15 RSP11113-RKM-2018-021 5.96
16 RSP11186-Mothers Milk 5 6.08
17 RSP11265-Pure Power Plant 6.11
18 RSP11072-SFVxTK 6.28
19 RSP11049-Hermaphrodite Research Sample1 6.37
20 RSP10837-Skywalker OG 6.39
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11096-RKM-2018-005 5.69
2 RSP11124-RKM-2018-032 6.1
3 RSP11049-Hermaphrodite Research Sample1 6.35
4 RSP10837-Skywalker OG 6.53
5 RSP11125-RKM-2018-033 7.06
6 RSP11073-Pie Hoe 7.36
7 RSP11118-RKM-2018-026 7.55
8 RSP11050-Hermaphrodite ResearchSample2 7.58
9 RSP11014-Durban Poison 7.69
10 RSP10684-Blueberry Cheesecake 7.7
11 RSP11048-Gold Cracker 8.05
12 RSP11100-RKM-2018-009 8.08
13 RSP11126-RKM-2018-034 8.13
14 RSP10680-Blueberry Cheesecake 8.28
15 RSP10551-Sour Raspberry 8.44
16 RSP11000-Liberty Haze 8.45
17 RSP11110-RKM-2018-018 8.49
18 RSP10988-The Gift 8.65
19 RSP11112-RKM-2018-020 8.73
20 RSP10991-Golden Goat 2 8.87
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR8349234 113 88
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495160 6 6

Blockchain Registration Information:

Transaction ID: 5324a79203d07b33f8dd0406f6772b4c171f01d9f35f85d6ab5afb30a194877b
Stamping Certificate: PDF
SHASUM Hash: b6fe1e5490427984d02360591b88f2c8aed4cf0b44e4f2e5b4efee46000f7ddc