RKM-2018-006

RSP11097
StrainSEEK Cannabis Certification Report

Accession Date:

September 7, 2018

General Information

Strain: RKM-2018-006
RSP ID: RSP11097
Grower: R-Kiem Seeds
Accession Date: September 7, 2018
Gender: Female
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 0.61
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.948T>Gp.Asp316Glumissense variantMODERATEcontig7001950690

IGV:Start|Jump

A/C

NGS:0.456

C90:0.000

0.456
PKSG-2b

UNIPROT

c.945T>Gp.Ser315Argmissense variantMODERATEcontig7001950693

IGV:Start|Jump

A/C

NGS:0.454

C90:0.000

0.454
PKSG-2b

UNIPROT

c.944G>Ap.Ser315Asnmissense variantMODERATEcontig7001950694

IGV:Start|Jump

C/T

NGS:0.445

C90:0.000

0.445
PKSG-2b

UNIPROT

c.934C>Gp.His312Aspmissense variantMODERATEcontig7001950704

IGV:Start|Jump

G/C

NGS:0.410

C90:0.000

0.41
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-2b

UNIPROT

c.-2_1dupATAstart lost&conservative inframe insertionHIGHcontig7001951880

IGV:Start|Jump

A/ATAT

NGS:0.410

C90:0.000

0.41
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
PKSG-4b

UNIPROT

c.419A>Gp.Asp140Glymissense variantMODERATEcontig7002721254

IGV:Start|Jump

T/C

NGS:0.430

C90:0.440

0.43
aPT4

UNIPROT

c.626A>Gp.Asn209Sermissense variantMODERATEcontig1212830904

IGV:Start|Jump

A/G

NGS:0.035

C90:0.000

0.035
aPT1

UNIPROT

c.160A>Cp.Thr54Promissense variantMODERATEcontig1212835867

IGV:Start|Jump

A/C

NGS:0.086

C90:0.048

0.086
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
aPT1

UNIPROT

c.670T>Ap.Ser224Thrmissense variantMODERATEcontig1212840278

IGV:Start|Jump

T/A

NGS:0.077

C90:0.000

0.077
aPT1

UNIPROT

c.727G>Tp.Glu243*stop gainedHIGHcontig1212841362

IGV:Start|Jump

G/T

NGS:0.127

C90:0.100

0.127


NEAREST GENETIC RELATIVES TO RKM-2018-006:
# Relative Genetic Distance
1 RSP10995-Tangerine Haze 4.32
2 RSP11179-Saint Jack 4.66
3 RSP11102-RKM-2018-011 4.98
4 RSP11339-Green Crack 5.14
5 RSP11119-RKM-2018-027 5.54
6 RSP11347-Jacks Cleaner 5.66
7 RSP11346-BLACK JACK 6.08
8 RSP11108-RKM-2018-016 6.17
9 RSP11117-RKM-2018-025 6.19
10 RSP10603-Black Jack 6.41
11 RSP11168-North Traveler 6.48
12 RSP10990-Italian Kiss 6.5
13 RSP11034-Italian Kiss 6.65
14 RSP11007-Blue Dream 6.67
15 RSP11229-Lemon Skunk 6.78
16 RSP11010-Blue Dream 6.85
17 RSP10460-Cheese 6.87
18 RSP11042-Hermaphrodite Research Sample1 7.09
19 RSP11342-Blue Dream 7.1
20 RSP11017-Blue Dream 7.2
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11119-RKM-2018-027 5.77
2 RSP11034-Italian Kiss 6.73
3 RSP11048-Gold Cracker 7.29
4 RSP11094-RKM-2018-003 7.35
5 RSP11049-Hermaphrodite Research Sample1 7.36
6 RSP11033-Blue Dream 7.4
7 RSP11123-RKM-2018-031 7.53
8 RSP11120-RKM-2018-028 7.71
9 RSP10989-UP Sunrise 7.78
10 RSP11100-RKM-2018-009 7.78
11 RSP11014-Durban Poison 7.82
12 RSP11114-RKM-2018-022 8.17
13 RSP11132-Cbot-2019-004 8.21
14 RSP11038-Skunk 18 8.27
15 RSP11112-RKM-2018-020 8.27
16 RSP11050-Hermaphrodite ResearchSample2 8.28
17 RSP10551-Sour Raspberry 8.41
18 RSP11075-JL yellow 8.43
19 RSP10755-Recon 8.47
20 RSP10684-Blueberry Cheesecake 8.48
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR4448801 118 86
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495228 12 9

Blockchain Registration Information:

Transaction ID: 7a263e01a94fa28c3415668b7e8b916c5d460a4f34ffe3ddc8cea273091f6cce
Stamping Certificate: PDF
SHASUM Hash: 844ad89d2f630a8a84cfb7b6d59e158b1961b062a575bbaa324ec295ab30d072