Advanced Strain Search

RKM-2018-006

RSP 11097

Grower: R-Kiem Seeds

General Information

Accession Date
September 6, 2018
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.61%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0370
male female RSP11097

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
aPT4

UniProt

c.626A>G p.Asn209Ser missense variant moderate contig121 2830904

IGV: Start, Jump

A/G
NGS:
0.035
C90:
0.000
aPT1

UniProt

c.160A>C p.Thr54Pro missense variant moderate contig121 2835867

IGV: Start, Jump

A/C
NGS:
0.086
C90:
0.048
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.670T>A p.Ser224Thr missense variant moderate contig121 2840278

IGV: Start, Jump

T/A
NGS:
0.077
C90:
0.000
aPT1

UniProt

c.727G>T p.Glu243* stop gained high contig121 2841362

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.100

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
closely related moderately related distantly related
  1. 0.141 Tangerine Haze (RSP10995)
  2. 0.150 Saint Jack (RSP11179)
  3. 0.163 Green Crack (RSP11339)
  4. 0.177 RKM-2018-011 (RSP11102)
  5. 0.193 Hindu Kush (SRR14708261)
  6. 0.199 RKM-2018-027 (RSP11119)
  7. 0.203 Jacks Cleaner (RSP11347)
  8. 0.210 BLACK JACK (RSP11346)
  9. 0.213 MBD (RSP11368)
  10. 0.216 RKM-2018-025 (RSP11117)
  11. 0.218 Black Jack (RSP10603)
  12. 0.219 RKM-2018-016 (RSP11108)
  13. 0.219 Cheese (RSP10460)
  14. 0.224 Italian Kiss (RSP10990)
  15. 0.225 PWE (RSP11369)
  16. 0.225 Lemon Skunk (RSP11229)
  17. 0.228 North Traveler (RSP11168)
  18. 0.230 Italian Kiss (RSP11034)
  19. 0.231 UP Sunrise (RSP10989)
  20. 0.232 Blue Dream (RSP11010)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
closely related moderately related distantly related
  1. 0.483 Cherry Blossom (RSP11298)
  2. 0.479 Cherry Blossom (RSP11328)
  3. 0.471 Cherry Blossom (RSP11334)
  4. 0.467 Cherry Blossom (RSP11311)
  5. 0.454 Cherry Blossom (RSP11309)
  6. 0.443 Cherry Blossom (RSP11323)
  7. 0.440 Cherry Blossom (RSP11317)
  8. 0.435 CHEM4 (RSP12090)
  9. 0.434 Cherry Blossom (RSP11335)
  10. 0.434 Cherry Blossom (RSP11308)
  11. 0.432 80E (RSP11213)
  12. 0.432 Cherry Blossom (RSP11330)
  13. 0.432 Deadhead OG (RSP11463)
  14. 0.429 GMO x Zkittlez #43 (RSP11976)
  15. 0.428 Feral (RSP11205)
  16. 0.425 Red Eye OG (RSP11190)
  17. 0.423 Fatso (RSP11741)
  18. 0.421 Carmaleonte (RSP11207)
  19. 0.421 Juicy Gummy x Royal Kush (RSP12484)
  20. 0.421 Cherry Blossom (RSP11314)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448801
Overlapping SNPs:
118
Concordance:
86

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495228
Overlapping SNPs:
12
Concordance:
9

Blockchain Registration Information

Transaction ID
7a263e01a94fa28c3415668b7e8b916c5d460a4f34ffe3ddc8cea273091f6cce
Stamping Certificate
Download PDF (865.3 KB)
SHASUM Hash
844ad89d2f630a8a84cfb7b6d59e158b1961b062a575bbaa324ec295ab30d072
QR code for RSP11097

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