RKM-2018-008

RSP11099
StrainSEEK Cannabis Certification Report

Accession Date:

September 7, 2018

General Information

Strain: RKM-2018-008
RSP ID: RSP11099
Grower: R-Kiem Seeds
Accession Date: September 7, 2018
Gender: Female
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 1
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCASc.998C>Gp.Pro333Argmissense variantMODERATEcontig7414416830

IGV:Start|Jump

G/C

NGS:0.182

C90:0.000

0.182



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1124G>Cp.Arg375Thrmissense variantMODERATEcontig7001950514

IGV:Start|Jump

C/G

NGS:0.015

C90:0.000

0.015
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.1105C>Gp.Pro369Alamissense variantMODERATEcontig7001950533

IGV:Start|Jump

G/C

NGS:0.013

C90:0.000

0.013
PKSG-2b

UNIPROT

c.995C>Tp.Ser332Phemissense variantMODERATEcontig7001950643

IGV:Start|Jump

G/A

NGS:0.042

C90:0.000

0.042
PKSG-2b

UNIPROT

c.948T>Gp.Asp316Glumissense variantMODERATEcontig7001950690

IGV:Start|Jump

A/C

NGS:0.456

C90:0.000

0.456
PKSG-2b

UNIPROT

c.945T>Gp.Ser315Argmissense variantMODERATEcontig7001950693

IGV:Start|Jump

A/C

NGS:0.454

C90:0.000

0.454
PKSG-2b

UNIPROT

c.944G>Ap.Ser315Asnmissense variantMODERATEcontig7001950694

IGV:Start|Jump

C/T

NGS:0.445

C90:0.000

0.445
PKSG-2b

UNIPROT

c.934C>Gp.His312Aspmissense variantMODERATEcontig7001950704

IGV:Start|Jump

G/C

NGS:0.410

C90:0.000

0.41
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
aPT1

UNIPROT

c.629C>Tp.Thr210Ilemissense variantMODERATEcontig1212840237

IGV:Start|Jump

C/T

NGS:0.561

C90:0.598

0.561


NEAREST GENETIC RELATIVES TO RKM-2018-008:
# Relative Genetic Distance
1 RSP10988-The Gift 0.24
2 RSP11265-Pure Power Plant 4.26
3 RSP11231-Gorilla Cookies 4.86
4 RSP11124-RKM-2018-032 4.92
5 RSP11109-RKM-2018-017 4.93
6 RSP11113-RKM-2018-021 4.94
7 RSP10837-Skywalker OG 5.15
8 RSP11072-SFVxTK 5.16
9 RSP11104-RKM-2018-013 5.21
10 RSP11353-Rugburn OG 5.3
11 RSP11340-LEMONCAKE 5.37
12 RSP11126-RKM-2018-034 5.59
13 RSP10997-Kimbo Slice 5.81
14 RSP11348-JABBA S STASH 5.84
15 RSP11190-Red Eye OG 5.87
16 RSP11128-Kush Hemp E1 5.92
17 RSP11073-Pie Hoe 5.96
18 RSP11103-RKM-2018-012 6.05
19 RSP11355-SHERBERT 6.33
20 RSP11344-Square Wave 6.34
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP10988-The Gift 0.22
2 RSP11124-RKM-2018-032 4.8
3 RSP10837-Skywalker OG 5.04
4 RSP11126-RKM-2018-034 5.49
5 RSP10997-Kimbo Slice 5.74
6 RSP11128-Kush Hemp E1 5.79
7 RSP11073-Pie Hoe 6.04
8 RSP11118-RKM-2018-026 6.32
9 RSP10684-Blueberry Cheesecake 6.68
10 RSP11050-Hermaphrodite ResearchSample2 6.9
11 RSP11125-RKM-2018-033 7.23
12 RSP10680-Blueberry Cheesecake 7.48
13 RSP11000-Liberty Haze 7.65
14 RSP10755-Recon 7.96
15 RSP10991-Golden Goat 2 7.98
16 RSP11112-RKM-2018-020 8.07
17 RSP11038-Skunk 18 8.21
18 RSP11049-Hermaphrodite Research Sample1 8.3
19 RSP10551-Sour Raspberry 8.36
20 RSP11121-RKM-2018-029 8.43
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR4448505 108 108
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495308 13 13

Blockchain Registration Information:

Transaction ID: b52b1ebc5e2e2ec762a96cd640d4bec3844f8d4363ab829f703de712f9c3d638
Stamping Certificate: PDF
SHASUM Hash: 77c367b7cb3927aa2729d44240e2dbcbb7245cb44455629c74a5fb02117e514c