RKM-2018-009

RSP11100
StrainSEEK Cannabis Certification Report

Accession Date:

September 7, 2018

General Information

Strain: RKM-2018-009
RSP ID: RSP11100
Grower: R-Kiem Seeds
Accession Date: September 7, 2018
Gender: Female
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 0.84
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCASc.998C>Gp.Pro333Argmissense variantMODERATEcontig7414416830

IGV:Start|Jump

G/C

NGS:0.182

C90:0.000

0.182



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.948T>Gp.Asp316Glumissense variantMODERATEcontig7001950690

IGV:Start|Jump

A/C

NGS:0.456

C90:0.000

0.456
PKSG-2b

UNIPROT

c.945T>Gp.Ser315Argmissense variantMODERATEcontig7001950693

IGV:Start|Jump

A/C

NGS:0.454

C90:0.000

0.454
PKSG-2b

UNIPROT

c.944G>Ap.Ser315Asnmissense variantMODERATEcontig7001950694

IGV:Start|Jump

C/T

NGS:0.445

C90:0.000

0.445
PKSG-2b

UNIPROT

c.934C>Gp.His312Aspmissense variantMODERATEcontig7001950704

IGV:Start|Jump

G/C

NGS:0.410

C90:0.000

0.41
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-2b

UNIPROT

c.-2_1dupATAstart lost&conservative inframe insertionHIGHcontig7001951880

IGV:Start|Jump

A/ATAT

NGS:0.410

C90:0.000

0.41
PKSG-4b

UNIPROT

c.527G>Tp.Trp176Leumissense variantMODERATEcontig7002721146

IGV:Start|Jump

C/A

NGS:0.033

C90:0.000

0.033
PKSG-4b

UNIPROT

c.526T>Cp.Trp176Argmissense variantMODERATEcontig7002721147

IGV:Start|Jump

A/G

NGS:0.037

C90:0.000

0.037
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
PKSG-4b

UNIPROT

c.419A>Gp.Asp140Glymissense variantMODERATEcontig7002721254

IGV:Start|Jump

T/C

NGS:0.430

C90:0.440

0.43
aPT4

UNIPROT

c.302A>Gp.Asn101Sermissense variantMODERATEcontig1212829099

IGV:Start|Jump

A/G

NGS:0.349

C90:0.000

0.349
aPT4

UNIPROT

c.1168T>Cp.Tyr390Hismissense variantMODERATEcontig1212833503

IGV:Start|Jump

T/C

NGS:0.546

C90:0.000

0.546
aPT1

UNIPROT

c.629C>Tp.Thr210Ilemissense variantMODERATEcontig1212840237

IGV:Start|Jump

C/T

NGS:0.561

C90:0.598

0.561


NEAREST GENETIC RELATIVES TO RKM-2018-009:
# Relative Genetic Distance
1 RSP10940-OR 5.62
2 RSP11101-RKM-2018-010 5.94
3 RSP11342-Blue Dream 6.16
4 RSP11355-SHERBERT 6.18
5 RSP11102-RKM-2018-011 6.22
6 RSP10763-Serious Happiness 6.23
7 RSP10989-UP Sunrise 6.28
8 RSP11011-Super Blue Dream 6.33
9 RSP11354-Dominion Skunk 6.34
10 RSP11048-Gold Cracker 6.37
11 RSP11017-Blue Dream 6.37
12 RSP11185-Chem 91 6.38
13 RSP10551-Sour Raspberry 6.43
14 RSP11007-Blue Dream 6.49
15 RSP11010-Blue Dream 6.5
16 RSP11256-UP Sunset 6.5
17 RSP11006-Blue Dream 6.52
18 RSP11034-Italian Kiss 6.53
19 RSP11003-Snoops Dream 6.55
20 RSP11008-Blue Dream 6.57
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP10551-Sour Raspberry 6.43
2 RSP11048-Gold Cracker 6.46
3 RSP10989-UP Sunrise 6.52
4 RSP11034-Italian Kiss 6.64
5 RSP11125-RKM-2018-033 6.64
6 RSP11033-Blue Dream 6.72
7 RSP11124-RKM-2018-032 6.73
8 RSP11050-Hermaphrodite ResearchSample2 6.88
9 RSP11049-Hermaphrodite Research Sample1 7.13
10 RSP10680-Blueberry Cheesecake 7.17
11 RSP10684-Blueberry Cheesecake 7.47
12 RSP11112-RKM-2018-020 7.56
13 RSP11120-RKM-2018-028 7.71
14 RSP11097-RKM-2018-006 7.78
15 RSP11119-RKM-2018-027 7.88
16 RSP11096-RKM-2018-005 7.99
17 RSP11118-RKM-2018-026 8
18 RSP11093-RKM-2018-002 8.08
19 RSP11134-Cbot-2019-006 8.18
20 RSP11002-CST 8.23
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR8349039 118 84

Blockchain Registration Information:

Transaction ID: 60f0ab929a77d14e936a3f598723943772986f589f76aea5a63aaefff31bb4e2
Stamping Certificate: PDF
SHASUM Hash: aeebc9b1623262de492fe8d8fbd9b46f9afdf3b7c50cb661e93d6b086799b806