RKM-2018-023

RSP11115
StrainSEEK Cannabis Certification Report

Accession Date:

October 22, 2018

General Information

Strain: RKM-2018-023
RSP ID: RSP11115
Grower: R-Kiem Seeds
Accession Date: October 22, 2018
Gender: Female
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 1.34
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCASc.1229G>Ap.Gly410Glumissense variantMODERATEcontig7414416599

IGV:Start|Jump

C/T

NGS:0.039

C90:0.000

0.039
THCASc.749C>Ap.Ala250Aspmissense variantMODERATEcontig7414417079

IGV:Start|Jump

G/T

NGS:0.127

C90:0.632

0.127
THCASc.373G>Cp.Val125Leumissense variantMODERATEcontig7414417455

IGV:Start|Jump

C/G

NGS:0.050

C90:0.000

0.05



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-4a

UNIPROT

c.493G>Ap.Gly165Sermissense variantMODERATEcontig7001937904

IGV:Start|Jump

G/A

NGS:0.103

C90:0.000

0.103
PKSG-2a

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001944273

IGV:Start|Jump

T/C

NGS:0.101

C90:0.967

0.101
PKSG-2a

UNIPROT

c.948T>Gp.Asp316Glumissense variantMODERATEcontig7001944442

IGV:Start|Jump

A/C

NGS:0.079

C90:0.000

0.079
PKSG-2a

UNIPROT

c.945T>Gp.Ser315Argmissense variantMODERATEcontig7001944445

IGV:Start|Jump

A/C

NGS:0.079

C90:0.000

0.079
PKSG-2a

UNIPROT

c.944G>Ap.Ser315Asnmissense variantMODERATEcontig7001944446

IGV:Start|Jump

C/T

NGS:0.079

C90:0.000

0.079
PKSG-2a

UNIPROT

c.934C>Gp.His312Aspmissense variantMODERATEcontig7001944456

IGV:Start|Jump

G/C

NGS:0.070

C90:0.000

0.07
PKSG-2a

UNIPROT

c.241G>Ap.Val81Metmissense variantMODERATEcontig7001945149

IGV:Start|Jump

C/T

NGS:0.136

C90:0.000

0.136
PKSG-2a

UNIPROT

c.240T>Gp.Asp80Glumissense variantMODERATEcontig7001945150

IGV:Start|Jump

A/C

NGS:0.136

C90:0.000

0.136
PKSG-2a

UNIPROT

c.230T>Cp.Val77Alamissense variantMODERATEcontig7001945160

IGV:Start|Jump

A/G

NGS:0.114

C90:0.000

0.114
PKSG-2a

UNIPROT

c.224A>Gp.Lys75Argmissense variantMODERATEcontig7001945166

IGV:Start|Jump

T/C

NGS:0.143

C90:0.962

0.143
PKSG-2a

UNIPROT

c.188T>Gp.Ile63Sermissense variantMODERATEcontig7001945202

IGV:Start|Jump

A/C

NGS:0.101

C90:0.000

0.101
PKSG-2a

UNIPROT

c.188T>Ap.Ile63Asnmissense variantMODERATEcontig7001945202

IGV:Start|Jump

A/T

NGS:0.061

C90:0.000

0.061
PKSG-2a

UNIPROT

c.187A>Tp.Ile63Phemissense variantMODERATEcontig7001945203

IGV:Start|Jump

T/A

NGS:0.101

C90:0.000

0.101
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.67A>Tp.Ile23Phemissense variantMODERATEcontig7001951815

IGV:Start|Jump

T/A

NGS:0.033

C90:0.325

0.033
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-4b

UNIPROT

c.544G>Tp.Gly182Trpmissense variantMODERATEcontig7002721129

IGV:Start|Jump

C/A

NGS:0.055

C90:0.000

0.055
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
PKSG-4b

UNIPROT

c.419A>Gp.Asp140Glymissense variantMODERATEcontig7002721254

IGV:Start|Jump

T/C

NGS:0.430

C90:0.440

0.43
PKSG-4b

UNIPROT

c.352_355delACAGp.Thr118fsframeshift variantHIGHcontig7002721317

IGV:Start|Jump

CCTGT/C

NGS:0.529

C90:0.000

0.529
PKSG-4b

UNIPROT

c.353_354insCCp.Gly119fsframeshift variantHIGHcontig7002721319

IGV:Start|Jump

T/TGG

NGS:0.175

C90:0.000

0.175
PKSG-4b

UNIPROT

c.338G>Ap.Gly113Glumissense variantMODERATEcontig7002721335

IGV:Start|Jump

C/T

NGS:0.046

C90:0.000

0.046
PKSG-4b

UNIPROT

c.323A>Gp.Glu108Glymissense variantMODERATEcontig7002721350

IGV:Start|Jump

T/C

NGS:0.469

C90:0.000

0.469
DXR-2

UNIPROT

c.1319T>Cp.Ile440Thrmissense variantMODERATEcontig380285250

IGV:Start|Jump

A/G

NGS:0.480

C90:0.000

0.48
DXR-2

UNIPROT

c.1319T>Ap.Ile440Asnmissense variantMODERATEcontig380285250

IGV:Start|Jump

A/T

NGS:0.004

C90:0.000

0.004
aPT4

UNIPROT

c.97T>Cp.Tyr33Hismissense variantMODERATEcontig1212828753

IGV:Start|Jump

T/C

NGS:0.439

C90:0.000

0.439
aPT4

UNIPROT

c.775delTp.Tyr259fsframeshift variantHIGHcontig1212831380

IGV:Start|Jump

AT/A

NGS:0.224

C90:0.000

0.224
aPT4

UNIPROT

c.1168T>Cp.Tyr390Hismissense variantMODERATEcontig1212833503

IGV:Start|Jump

T/C

NGS:0.546

C90:0.000

0.546
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
aPT1

UNIPROT

c.630_634delTGTCTp.Val211fsframeshift variantHIGHcontig1212840237

IGV:Start|Jump

CTGTCT/C

NGS:0.004

C90:0.000

0.004
aPT1

UNIPROT

c.629C>Tp.Thr210Ilemissense variantMODERATEcontig1212840237

IGV:Start|Jump

CTGTCT/TTGTCT

NGS:0.561

C90:0.598

0.561
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
HDS-2

UNIPROT

c.127T>Gp.Ser43Alamissense variantMODERATEcontig951989794

IGV:Start|Jump

T/G

NGS:0.721

C90:0.000

0.721


NEAREST GENETIC RELATIVES TO RKM-2018-023:
# Relative Genetic Distance
1 RSP10942-Erez 6.15
2 RSP11171-Alaska USA 6.2
3 RSP11038-Skunk 18 6.37
4 RSP11119-RKM-2018-027 6.43
5 RSP11030-Skunk 18 6.46
6 RSP10603-Black Jack 6.5
7 RSP10460-Cheese 6.55
8 RSP10996-Durban Poison 1 6.6
9 RSP10763-Serious Happiness 6.67
10 RSP11346-BLACK JACK 6.68
11 RSP11116-RKM-2018-024 6.74
12 RSP11014-Durban Poison 6.77
13 RSP11127-Jamaican Lions Ancestor 6.82
14 RSP11110-RKM-2018-018 6.87
15 RSP10998-Durban Poison 6.88
16 RSP11000-Liberty Haze 6.89
17 RSP10946-Liberty Haze 6.89
18 RSP11098-RKM-2018-007 6.95
19 RSP11041-Gold Cracker 6.95
20 RSP11347-Jacks Cleaner 6.97
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11038-Skunk 18 6.38
2 RSP11119-RKM-2018-027 6.39
3 RSP11000-Liberty Haze 6.49
4 RSP11014-Durban Poison 6.74
5 RSP11110-RKM-2018-018 6.84
6 RSP11048-Gold Cracker 7.05
7 RSP10991-Golden Goat 2 7.08
8 RSP11094-RKM-2018-003 7.09
9 RSP11002-CST 7.61
10 RSP11034-Italian Kiss 7.64
11 RSP10684-Blueberry Cheesecake 7.79
12 RSP11121-RKM-2018-029 7.88
13 RSP11033-Blue Dream 7.89
14 RSP11049-Hermaphrodite Research Sample1 7.91
15 RSP11134-Cbot-2019-006 7.93
16 RSP11120-RKM-2018-028 8.06
17 RSP11035-Black Beauty 8.06
18 RSP10989-UP Sunrise 8.07
19 RSP11112-RKM-2018-020 8.24
20 RSP11050-Hermaphrodite ResearchSample2 8.36
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR8349125 94 61
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495216 11 9

Blockchain Registration Information:

Transaction ID: c39fac25b74381f4a7478b3127611ca4e7046b6e12817c75b9285f41bd0e4c77
Stamping Certificate: PDF
SHASUM Hash: 91c6309f67882a520d72c32a502719a323ff076e7b47f80334821d2cd2a7a221