RKM-2018-024

RSP11116
StrainSEEK Cannabis Certification Report

Accession Date:

October 22, 2018

General Information

Strain: RKM-2018-024
RSP ID: RSP11116
Grower: R-Kiem Seeds
Accession Date: October 22, 2018
Gender: Female
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 1.21
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCASc.1229G>Ap.Gly410Glumissense variantMODERATEcontig7414416599

IGV:Start|Jump

C/T

NGS:0.039

C90:0.000

0.039
THCASc.373G>Cp.Val125Leumissense variantMODERATEcontig7414417455

IGV:Start|Jump

C/G

NGS:0.050

C90:0.000

0.05



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-4a

UNIPROT

c.493G>Ap.Gly165Sermissense variantMODERATEcontig7001937904

IGV:Start|Jump

G/A

NGS:0.103

C90:0.000

0.103
PKSG-2a

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001944273

IGV:Start|Jump

T/C

NGS:0.101

C90:0.967

0.101
PKSG-2a

UNIPROT

c.948T>Gp.Asp316Glumissense variantMODERATEcontig7001944442

IGV:Start|Jump

A/C

NGS:0.079

C90:0.000

0.079
PKSG-2a

UNIPROT

c.945T>Gp.Ser315Argmissense variantMODERATEcontig7001944445

IGV:Start|Jump

A/C

NGS:0.079

C90:0.000

0.079
PKSG-2a

UNIPROT

c.943_944insAGGAp.Ser315fsframeshift variantHIGHcontig7001944446

IGV:Start|Jump

C/CTCCT

NGS:0.002

C90:0.000

0.002
PKSG-2a

UNIPROT

c.944G>Ap.Ser315Asnmissense variantMODERATEcontig7001944446

IGV:Start|Jump

C/T

NGS:0.079

C90:0.000

0.079
PKSG-2a

UNIPROT

c.934C>Gp.His312Aspmissense variantMODERATEcontig7001944456

IGV:Start|Jump

G/C

NGS:0.070

C90:0.000

0.07
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-4b

UNIPROT

c.544G>Tp.Gly182Trpmissense variantMODERATEcontig7002721129

IGV:Start|Jump

C/A

NGS:0.055

C90:0.000

0.055
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
PKSG-4b

UNIPROT

c.419A>Gp.Asp140Glymissense variantMODERATEcontig7002721254

IGV:Start|Jump

T/C

NGS:0.430

C90:0.440

0.43
PKSG-4b

UNIPROT

c.352_355delACAGp.Thr118fsframeshift variantHIGHcontig7002721317

IGV:Start|Jump

CCTGT/C

NGS:0.529

C90:0.000

0.529
PKSG-4b

UNIPROT

c.353_354insCCp.Gly119fsframeshift variantHIGHcontig7002721319

IGV:Start|Jump

T/TGG

NGS:0.175

C90:0.000

0.175
PKSG-4b

UNIPROT

c.338G>Ap.Gly113Glumissense variantMODERATEcontig7002721335

IGV:Start|Jump

C/T

NGS:0.046

C90:0.000

0.046
PKSG-4b

UNIPROT

c.323A>Gp.Glu108Glymissense variantMODERATEcontig7002721350

IGV:Start|Jump

T/C

NGS:0.469

C90:0.000

0.469
aPT4

UNIPROT

c.775delTp.Tyr259fsframeshift variantHIGHcontig1212831380

IGV:Start|Jump

AT/A

NGS:0.224

C90:0.000

0.224
aPT4

UNIPROT

c.1168T>Cp.Tyr390Hismissense variantMODERATEcontig1212833503

IGV:Start|Jump

T/C

NGS:0.546

C90:0.000

0.546
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
aPT1

UNIPROT

c.629C>Tp.Thr210Ilemissense variantMODERATEcontig1212840237

IGV:Start|Jump

C/T

NGS:0.561

C90:0.598

0.561
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
HDS-2

UNIPROT

c.127T>Gp.Ser43Alamissense variantMODERATEcontig951989794

IGV:Start|Jump

T/G

NGS:0.721

C90:0.000

0.721


NEAREST GENETIC RELATIVES TO RKM-2018-024:
# Relative Genetic Distance
1 RSP11347-Jacks Cleaner 6.65
2 RSP11115-RKM-2018-023 6.74
3 RSP10940-OR 7.34
4 RSP11259-UP Green Flash 7.36
5 RSP10995-Tangerine Haze 7.43
6 RSP11346-BLACK JACK 7.5
7 RSP11351-T S A G E 7.6
8 RSP11042-Hermaphrodite Research Sample1 7.61
9 RSP11049-Hermaphrodite Research Sample1 7.71
10 RSP10990-Italian Kiss 7.71
11 RSP11034-Italian Kiss 7.73
12 RSP10989-UP Sunrise 7.75
13 RSP10603-Black Jack 7.77
14 RSP11041-Gold Cracker 7.81
15 RSP11260-UP The Straits 7.83
16 RSP11117-RKM-2018-025 7.83
17 RSP11108-RKM-2018-016 7.85
18 RSP11342-Blue Dream 7.87
19 RSP11170-EREZ USA 7.94
20 RSP11003-Snoops Dream 7.97
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11115-RKM-2018-023 6.69
2 RSP11049-Hermaphrodite Research Sample1 7.72
3 RSP11034-Italian Kiss 7.74
4 RSP10989-UP Sunrise 7.98
5 RSP11119-RKM-2018-027 8.13
6 RSP11110-RKM-2018-018 8.2
7 RSP11000-Liberty Haze 8.2
8 RSP11048-Gold Cracker 8.27
9 RSP11038-Skunk 18 8.31
10 RSP11033-Blue Dream 8.53
11 RSP11100-RKM-2018-009 8.56
12 RSP11123-RKM-2018-031 8.72
13 RSP11097-RKM-2018-006 8.77
14 RSP11120-RKM-2018-028 8.85
15 RSP11094-RKM-2018-003 8.91
16 RSP10551-Sour Raspberry 8.94
17 RSP11121-RKM-2018-029 8.98
18 RSP10680-Blueberry Cheesecake 9.39
19 RSP11112-RKM-2018-020 9.4
20 RSP11002-CST 9.4
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR4448210 92 69

Blockchain Registration Information:

Transaction ID: 625eb3d16f0c2464435280e20338340df553d470061edaebe2ccde96bc0368a5
Stamping Certificate: PDF
SHASUM Hash: 8284f3dd09398feeca1a968c893688ff2e8d3c1732687307ad4d368e8fde2211