RKM-2018-029

RSP11121
StrainSEEK Cannabis Certification Report

Accession Date:

October 22, 2018

General Information

Strain: RKM-2018-029
RSP ID: RSP11121
Grower: R-Kiem Seeds
Accession Date: October 22, 2018
Gender: Male
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 2.1
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCASc.998C>Gp.Pro333Argmissense variantMODERATEcontig7414416830

IGV:Start|Jump

G/C

NGS:0.182

C90:0.000

0.182
THCASc.922A>Gp.Thr308Alamissense variantMODERATEcontig7414416906

IGV:Start|Jump

T/C

NGS:0.004

C90:0.000

0.004
THCASc.373G>Cp.Val125Leumissense variantMODERATEcontig7414417455

IGV:Start|Jump

C/G

NGS:0.050

C90:0.000

0.05



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
GPPs1

UNIPROT

c.160A>Gp.Lys54Glumissense variantMODERATEcontig676168409

IGV:Start|Jump

A/G

NGS:0.026

C90:0.000

0.026
GPPs1

UNIPROT

c.472T>Ap.Leu158Metmissense variantMODERATEcontig676168721

IGV:Start|Jump

T/A

NGS:0.020

C90:0.000

0.02
GPPs1

UNIPROT

c.807_814delGCATTTTTp.His270fsframeshift variantHIGHcontig676169595

IGV:Start|Jump

GTGCATTTT/G

NGS:0.015

C90:0.000

0.015
PKSG-2a

UNIPROT

c.67T>Gp.Phe23Valmissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/C

NGS:0.002

C90:0.000

0.002
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.774G>Ap.Met258Ilemissense variantMODERATEcontig7001950864

IGV:Start|Jump

C/T

NGS:0.366

C90:0.947

0.366
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-2b

UNIPROT

c.-2_1dupATAstart lost&conservative inframe insertionHIGHcontig7001951880

IGV:Start|Jump

A/ATAT

NGS:0.410

C90:0.000

0.41
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
PKSG-4b

UNIPROT

c.419A>Gp.Asp140Glymissense variantMODERATEcontig7002721254

IGV:Start|Jump

T/C

NGS:0.430

C90:0.440

0.43
PKSG-4b

UNIPROT

c.352_355delACAGp.Thr118fsframeshift variantHIGHcontig7002721317

IGV:Start|Jump

CCTGT/C

NGS:0.529

C90:0.000

0.529
PKSG-4b

UNIPROT

c.353_354insCCp.Gly119fsframeshift variantHIGHcontig7002721319

IGV:Start|Jump

T/TGG

NGS:0.175

C90:0.000

0.175
PKSG-4b

UNIPROT

c.323A>Gp.Glu108Glymissense variantMODERATEcontig7002721350

IGV:Start|Jump

T/C

NGS:0.469

C90:0.000

0.469
DXR-2

UNIPROT

c.1319T>Cp.Ile440Thrmissense variantMODERATEcontig380285250

IGV:Start|Jump

A/G

NGS:0.480

C90:0.000

0.48
aPT4

UNIPROT

c.35A>Cp.Gln12Promissense variantMODERATEcontig1212828691

IGV:Start|Jump

A/C

NGS:0.075

C90:0.000

0.075
aPT4

UNIPROT

c.235_236delGTp.Val79fsframeshift variantHIGHcontig1212829030

IGV:Start|Jump

ATG/A

NGS:0.417

C90:0.000

0.417
aPT4

UNIPROT

c.238delTp.Ser80fsframeshift variantHIGHcontig1212829034

IGV:Start|Jump

AT/A

NGS:0.421

C90:0.000

0.421
aPT4

UNIPROT

c.450G>Ap.Met150Ilemissense variantMODERATEcontig1212830645

IGV:Start|Jump

G/A

NGS:0.007

C90:0.000

0.007
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
HDS-2

UNIPROT

c.127T>Gp.Ser43Alamissense variantMODERATEcontig951989794

IGV:Start|Jump

T/G

NGS:0.721

C90:0.000

0.721


NEAREST GENETIC RELATIVES TO RKM-2018-029:
# Relative Genetic Distance
1 RSP11107-RKM-2018-015 3.74
2 RSP11017-Blue Dream 6.65
3 RSP10763-Serious Happiness 6.83
4 RSP11006-Blue Dream 6.97
5 RSP10991-Golden Goat 2 7.01
6 RSP11184-Domnesia 7.04
7 RSP11009-Blue Dream 7.12
8 RSP11011-Super Blue Dream 7.14
9 RSP11010-Blue Dream 7.14
10 RSP10684-Blueberry Cheesecake 7.2
11 RSP11031-Snoops Dream 7.21
12 RSP11008-Blue Dream 7.21
13 RSP11345-Golden Road 7.26
14 RSP11007-Blue Dream 7.27
15 RSP11362-NSPM1 7.32
16 RSP11013-Durban Poison 1 7.33
17 RSP11003-Snoops Dream 7.35
18 RSP11000-Liberty Haze 7.35
19 RSP11004-Blue Dream 7.37
20 RSP11012-Blue Dream 7.39
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP10991-Golden Goat 2 7.05
2 RSP10684-Blueberry Cheesecake 7.17
3 RSP11000-Liberty Haze 7.46
4 RSP11014-Durban Poison 7.47
5 RSP11125-RKM-2018-033 7.53
6 RSP11096-RKM-2018-005 7.69
7 RSP10551-Sour Raspberry 7.72
8 RSP11033-Blue Dream 7.73
9 RSP10680-Blueberry Cheesecake 7.74
10 RSP11048-Gold Cracker 7.76
11 RSP11002-CST 7.76
12 RSP11124-RKM-2018-032 7.88
13 RSP11115-RKM-2018-023 7.88
14 RSP11049-Hermaphrodite Research Sample1 7.89
15 RSP11134-Cbot-2019-006 7.9
16 RSP11094-RKM-2018-003 7.94
17 RSP11050-Hermaphrodite ResearchSample2 7.96
18 RSP10997-Kimbo Slice 8.1
19 RSP10755-Recon 8.16
20 RSP11123-RKM-2018-031 8.18
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR8346886 91 58

Blockchain Registration Information:

Transaction ID: ed55a07609d6a2e97fbf3298dce345a368efd777aa64d915ec856c0bce9966fe
Stamping Certificate: PDF
SHASUM Hash: b5dfaf6100b6d6e2f49090166c89860af8b50bc0d79455a2553b9416564a6ae7