Kush Hemp E1

RSP11128
StrainSEEK Cannabis Certification Report

Accession Date:

January 17, 2019

General Information

Strain: Kush Hemp E1
RSP ID: RSP11128
Grower: Sovereign Fields
Accession Date: January 17, 2019
Gender: Female
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 0.74
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type III

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.948T>Gp.Asp316Glumissense variantMODERATEcontig7001950690

IGV:Start|Jump

A/C

NGS:0.456

C90:0.000

0.456
PKSG-2b

UNIPROT

c.945T>Gp.Ser315Argmissense variantMODERATEcontig7001950693

IGV:Start|Jump

A/C

NGS:0.454

C90:0.000

0.454
PKSG-2b

UNIPROT

c.944G>Ap.Ser315Asnmissense variantMODERATEcontig7001950694

IGV:Start|Jump

C/T

NGS:0.445

C90:0.000

0.445
PKSG-2b

UNIPROT

c.934C>Gp.His312Aspmissense variantMODERATEcontig7001950704

IGV:Start|Jump

G/C

NGS:0.410

C90:0.000

0.41
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-2b

UNIPROT

c.-2_1dupATAstart lost&conservative inframe insertionHIGHcontig7001951880

IGV:Start|Jump

A/ATAT

NGS:0.410

C90:0.000

0.41
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
PKSG-4b

UNIPROT

c.352_355delACAGp.Thr118fsframeshift variantHIGHcontig7002721317

IGV:Start|Jump

CCTGT/C

NGS:0.529

C90:0.000

0.529
aPT4

UNIPROT

c.1168T>Cp.Tyr390Hismissense variantMODERATEcontig1212833503

IGV:Start|Jump

T/C

NGS:0.546

C90:0.000

0.546
aPT1

UNIPROT

c.629C>Tp.Thr210Ilemissense variantMODERATEcontig1212840237

IGV:Start|Jump

C/T

NGS:0.561

C90:0.598

0.561
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805


NEAREST GENETIC RELATIVES TO Kush Hemp E1:
# Relative Genetic Distance
1 RSP11099-RKM-2018-008 5.92
2 RSP10988-The Gift 6.57
3 RSP11103-RKM-2018-012 7.06
4 RSP11340-LEMONCAKE 7.31
5 RSP11133-Cbot-2019-005 7.42
6 RSP11073-Pie Hoe 7.6
7 RSP11353-Rugburn OG 7.62
8 RSP11104-RKM-2018-013 7.64
9 RSP11109-RKM-2018-017 7.72
10 RSP11124-RKM-2018-032 7.82
11 RSP11113-RKM-2018-021 7.85
12 RSP11050-Hermaphrodite ResearchSample2 7.89
13 RSP11344-Square Wave 7.99
14 RSP10837-Skywalker OG 8.1
15 RSP11043-Hermaphrodite ResearchSample2 8.12
16 RSP11072-SFVxTK 8.13
17 RSP11348-JABBA S STASH 8.14
18 RSP11071-Sunday Driver 8.3
19 RSP11126-RKM-2018-034 8.32
20 RSP11118-RKM-2018-026 8.37
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP10988-The Gift 6.41
2 RSP11133-Cbot-2019-005 7.7
3 RSP11073-Pie Hoe 7.77
4 RSP10837-Skywalker OG 7.9
5 RSP11126-RKM-2018-034 7.99
6 RSP11124-RKM-2018-032 8.03
7 RSP11050-Hermaphrodite ResearchSample2 8.2
8 RSP11118-RKM-2018-026 8.27
9 RSP10684-Blueberry Cheesecake 8.89
10 RSP11132-Cbot-2019-004 8.99
11 RSP11048-Gold Cracker 9.03
12 RSP10755-Recon 9.09
13 RSP11134-Cbot-2019-006 9.13
14 RSP11114-RKM-2018-022 9.2
15 RSP10997-Kimbo Slice 9.28
16 RSP11125-RKM-2018-033 9.29
17 RSP11051-KYRG-11 9.35
18 RSP11100-RKM-2018-009 9.56
19 RSP11038-Skunk 18 9.6
20 RSP11000-Liberty Haze 9.71
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR8346693 113 75

Blockchain Registration Information:

Transaction ID: 2c5574a5fe0f243795f255923473a88ebd25a3eb327c88383ed4068fa740754d
Stamping Certificate: PDF
SHASUM Hash: c0e4593292350db29b252521ed6ab54247c0bc6daf6f92b8cf467c058a77ddc4