Cbot-2019-001

RSP11129
StrainSEEK Cannabis Certification Report

Accession Date:

February 6, 2019

General Information

Strain: Cbot-2019-001
RSP ID: RSP11129
Grower: Research Development Cannabinoid
Accession Date: February 6, 2019
Gender: Female
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 0.84
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type II

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.948T>Gp.Asp316Glumissense variantMODERATEcontig7001950690

IGV:Start|Jump

A/C

NGS:0.456

C90:0.000

0.456
PKSG-2b

UNIPROT

c.945T>Gp.Ser315Argmissense variantMODERATEcontig7001950693

IGV:Start|Jump

A/C

NGS:0.454

C90:0.000

0.454
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.492G>Cp.Glu164Aspmissense variantMODERATEcontig7002721181

IGV:Start|Jump

CTCA/GTCA

NGS:0.048

C90:0.000

0.048
PKSG-4b

UNIPROT

c.489_491delTGAp.Phe163_Glu164delinsLeudisruptive inframe deletionMODERATEcontig7002721181

IGV:Start|Jump

CTCA/C

NGS:0.002

C90:0.000

0.002
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
PKSG-4b

UNIPROT

c.419A>Gp.Asp140Glymissense variantMODERATEcontig7002721254

IGV:Start|Jump

T/C

NGS:0.430

C90:0.440

0.43
aPT4

UNIPROT

c.1168T>Cp.Tyr390Hismissense variantMODERATEcontig1212833503

IGV:Start|Jump

T/C

NGS:0.546

C90:0.000

0.546
aPT1

UNIPROT

c.629C>Tp.Thr210Ilemissense variantMODERATEcontig1212840237

IGV:Start|Jump

C/T

NGS:0.561

C90:0.598

0.561
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
HDS-2

UNIPROT

c.127T>Gp.Ser43Alamissense variantMODERATEcontig951989794

IGV:Start|Jump

T/G

NGS:0.721

C90:0.000

0.721


NEAREST GENETIC RELATIVES TO Cbot-2019-001:
# Relative Genetic Distance
1 RSP11174-AVIDEKEL 2 0 5.47
2 RSP11296-Queen Dream CBG 5.78
3 RSP11350-101st AIRBORN CBD 5.82
4 RSP11291-Queen Dream 5.86
5 RSP11279-Queen Dream CBG 5.92
6 RSP11148-Wife 5.98
7 RSP11297-Queen Dream CBG 5.98
8 RSP11292-Hot Blonde 5.99
9 RSP11293-Queen Dream CBG 6.04
10 RSP11285-Queen Dream CBG 6.15
11 RSP10989-UP Sunrise 6.25
12 RSP11276-Queen Dream CBG 6.3
13 RSP11275-Queen Dream CBG 6.35
14 RSP11349-CANNATONIC 6.36
15 RSP11283-Queen Dream CBG 6.56
16 RSP11131-Cbot-2019-003 6.59
17 RSP11281-Queen Dream CBG 6.7
18 RSP11361-FL30 6.72
19 RSP11290-Hot Blonde 6.75
20 RSP11000-Liberty Haze 6.87
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP10989-UP Sunrise 6.73
2 RSP11000-Liberty Haze 7.04
3 RSP11143-Cherry 7.57
4 RSP11014-Durban Poison 8.51
5 RSP10684-Blueberry Cheesecake 8.6
6 RSP11123-RKM-2018-031 8.83
7 RSP11110-RKM-2018-018 8.93
8 RSP10997-Kimbo Slice 8.94
9 RSP11112-RKM-2018-020 9.01
10 RSP11049-Hermaphrodite Research Sample1 9.03
11 RSP11034-Italian Kiss 9.07
12 RSP11033-Blue Dream 9.09
13 RSP10672-Blueberry Cheesecake 9.1
14 RSP11120-RKM-2018-028 9.18
15 RSP11097-RKM-2018-006 9.32
16 RSP11100-RKM-2018-009 9.37
17 RSP11119-RKM-2018-027 9.42
18 RSP11134-Cbot-2019-006 9.47
19 RSP11132-Cbot-2019-004 9.48
20 RSP10551-Sour Raspberry 9.48
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR4448694 122 100

Blockchain Registration Information:

Transaction ID: 899d461f0a098ea22ce20254a16b2073e04b1ce434c355bef00708e8ea6fea8a
Stamping Certificate: PDF
SHASUM Hash: cd9022391af50374119bb57964d3326744b7a83b5d79a23901e5295d417688e7