Cbot-2019-004

RSP11132
StrainSEEK Cannabis Certification Report

Accession Date:

February 6, 2019

General Information

Strain: Cbot-2019-004
RSP ID: RSP11132
Grower: Research Development Cannabinoid
Accession Date: February 6, 2019
Gender: -
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 0.91
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type III

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.948T>Gp.Asp316Glumissense variantMODERATEcontig7001950690

IGV:Start|Jump

A/C

NGS:0.456

C90:0.000

0.456
PKSG-2b

UNIPROT

c.945T>Gp.Ser315Argmissense variantMODERATEcontig7001950693

IGV:Start|Jump

A/C

NGS:0.454

C90:0.000

0.454
PKSG-2b

UNIPROT

c.944G>Ap.Ser315Asnmissense variantMODERATEcontig7001950694

IGV:Start|Jump

C/T

NGS:0.445

C90:0.000

0.445
PKSG-2b

UNIPROT

c.934C>Gp.His312Aspmissense variantMODERATEcontig7001950704

IGV:Start|Jump

G/C

NGS:0.410

C90:0.000

0.41
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-2b

UNIPROT

c.-2_1dupATAstart lost&conservative inframe insertionHIGHcontig7001951880

IGV:Start|Jump

A/ATAT

NGS:0.410

C90:0.000

0.41
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
HDS-2

UNIPROT

c.127T>Gp.Ser43Alamissense variantMODERATEcontig951989794

IGV:Start|Jump

T/G

NGS:0.721

C90:0.000

0.721


NEAREST GENETIC RELATIVES TO Cbot-2019-004:
# Relative Genetic Distance
1 RSP11130-Cbot-2019-002 4.65
2 RSP11131-Cbot-2019-003 6.48
3 RSP11133-Cbot-2019-005 6.84
4 RSP10603-Black Jack 7.24
5 RSP11346-BLACK JACK 7.28
6 RSP11117-RKM-2018-025 7.39
7 RSP10460-Cheese 7.48
8 RSP11108-RKM-2018-016 7.6
9 RSP10684-Blueberry Cheesecake 7.65
10 RSP11243-Doug's Varin 7.83
11 RSP10763-Serious Happiness 7.91
12 RSP11315-Cherry Blossom 7.93
13 RSP10996-Durban Poison 1 7.99
14 RSP11013-Durban Poison 1 8.06
15 RSP11119-RKM-2018-027 8.18
16 RSP11094-RKM-2018-003 8.2
17 RSP11000-Liberty Haze 8.2
18 RSP11316-Cherry Blossom 8.22
19 RSP11070-Danny Noonan 8.23
20 RSP11172-RAPHAEL 2 8.23
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11133-Cbot-2019-005 6.83
2 RSP10684-Blueberry Cheesecake 7.64
3 RSP11119-RKM-2018-027 8.09
4 RSP11000-Liberty Haze 8.18
5 RSP11097-RKM-2018-006 8.21
6 RSP11094-RKM-2018-003 8.25
7 RSP11002-CST 8.27
8 RSP11048-Gold Cracker 8.27
9 RSP11050-Hermaphrodite ResearchSample2 8.36
10 RSP11014-Durban Poison 8.42
11 RSP10680-Blueberry Cheesecake 8.51
12 RSP10755-Recon 8.68
13 RSP10105-QUEEN JESUS 8.81
14 RSP11100-RKM-2018-009 8.83
15 RSP11128-Kush Hemp E1 8.99
16 RSP11033-Blue Dream 9.1
17 RSP11096-RKM-2018-005 9.17
18 RSP10991-Golden Goat 2 9.2
19 RSP11120-RKM-2018-028 9.27
20 RSP11049-Hermaphrodite Research Sample1 9.38
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR4448321 119 77

Blockchain Registration Information:

Transaction ID: ba26ea0c305f611928401794bb975440504b6ff385d899c7f2a9f9ec9d29ca8b
Stamping Certificate: PDF
SHASUM Hash: c467eb2878977bf20362d263e10fab713940486601166bc1d3b08cc8b84d9caf