Cbot-2019-005

RSP11133
StrainSEEK Cannabis Certification Report

Accession Date:

February 6, 2019

General Information

Strain: Cbot-2019-005
RSP ID: RSP11133
Grower: Research Development Cannabinoid
Accession Date: February 6, 2019
Gender: -
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 0.81
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type III

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.948T>Gp.Asp316Glumissense variantMODERATEcontig7001950690

IGV:Start|Jump

A/C

NGS:0.456

C90:0.000

0.456
PKSG-2b

UNIPROT

c.945T>Gp.Ser315Argmissense variantMODERATEcontig7001950693

IGV:Start|Jump

A/C

NGS:0.454

C90:0.000

0.454
PKSG-2b

UNIPROT

c.944G>Ap.Ser315Asnmissense variantMODERATEcontig7001950694

IGV:Start|Jump

C/T

NGS:0.445

C90:0.000

0.445
PKSG-2b

UNIPROT

c.934C>Gp.His312Aspmissense variantMODERATEcontig7001950704

IGV:Start|Jump

G/C

NGS:0.410

C90:0.000

0.41
PKSG-2b

UNIPROT

c.774G>Ap.Met258Ilemissense variantMODERATEcontig7001950864

IGV:Start|Jump

C/T

NGS:0.366

C90:0.947

0.366
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-2b

UNIPROT

c.-2_1dupATAstart lost&conservative inframe insertionHIGHcontig7001951880

IGV:Start|Jump

A/ATAT

NGS:0.410

C90:0.000

0.41
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.484_485insGGTTGAGGAAGp.Lys162fsframeshift variantHIGHcontig7002721188

IGV:Start|Jump

T/TCTTCCTCAACC

NGS:0.002

C90:0.000

0.002
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
PKSG-4b

UNIPROT

c.352_355delACAGp.Thr118fsframeshift variantHIGHcontig7002721317

IGV:Start|Jump

CCTGT/C

NGS:0.529

C90:0.000

0.529
DXR-2

UNIPROT

c.1319T>Cp.Ile440Thrmissense variantMODERATEcontig380285250

IGV:Start|Jump

A/G

NGS:0.480

C90:0.000

0.48
aPT1

UNIPROT

c.629C>Tp.Thr210Ilemissense variantMODERATEcontig1212840237

IGV:Start|Jump

C/T

NGS:0.561

C90:0.598

0.561
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
HDS-2

UNIPROT

c.127T>Gp.Ser43Alamissense variantMODERATEcontig951989794

IGV:Start|Jump

T/G

NGS:0.721

C90:0.000

0.721


NEAREST GENETIC RELATIVES TO Cbot-2019-005:
# Relative Genetic Distance
1 RSP11131-Cbot-2019-003 5.72
2 RSP11174-AVIDEKEL 2 0 6.31
3 RSP11132-Cbot-2019-004 6.84
4 RSP11350-101st AIRBORN CBD 7.19
5 RSP11349-CANNATONIC 7.25
6 RSP11128-Kush Hemp E1 7.42
7 RSP11130-Cbot-2019-002 7.64
8 RSP11311-Cherry Blossom 8.56
9 RSP11295-Queen Dream CBG 8.68
10 RSP10085-RINGO S ANGEL 8.69
11 RSP11314-Cherry Blossom 8.76
12 RSP11172-RAPHAEL 2 8.9
13 RSP11283-Queen Dream CBG 8.97
14 RSP11278-Queen Dream 9.14
15 RSP10938-Avidekel 9.33
16 RSP10999-Miss X 9.34
17 RSP10755-Recon 9.36
18 RSP11272-Unknown- Cherry Wine - 005 9.45
19 RSP11297-Queen Dream CBG 9.47
20 RSP11331-Cherry Blossom 9.48
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11132-Cbot-2019-004 6.83
2 RSP11128-Kush Hemp E1 7.7
3 RSP10755-Recon 9.35
4 RSP10684-Blueberry Cheesecake 10.09
5 RSP11000-Liberty Haze 10.33
6 RSP11050-Hermaphrodite ResearchSample2 10.47
7 RSP11073-Pie Hoe 10.51
8 RSP11129-Cbot-2019-001 10.6
9 RSP11112-RKM-2018-020 10.61
10 RSP10105-QUEEN JESUS 10.73
11 RSP11048-Gold Cracker 10.73
12 RSP11051-KYRG-11 10.79
13 RSP10653-Jiangji 10.82
14 RSP10997-Kimbo Slice 10.87
15 RSP11002-CST 10.99
16 RSP10989-UP Sunrise 11.03
17 RSP11014-Durban Poison 11.1
18 RSP10988-The Gift 11.12
19 RSP11111-RKM-2018-019 11.23
20 RSP11094-RKM-2018-003 11.24
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR8347304 123 87

Blockchain Registration Information:

Transaction ID: 6a730f9bfdf2012f40fa6f202a4ece08037764e9f2633cf33c3715723bdc3422
Stamping Certificate: PDF
SHASUM Hash: d84ffd750f97c43adbc75da8f4c3ced744b7c299981deb36d4d083d299d31ee8