Cbot-2019-006

RSP11134
StrainSEEK Cannabis Certification Report

Accession Date:

February 6, 2019

General Information

Strain: Cbot-2019-006
RSP ID: RSP11134
Grower: Research Development Cannabinoid
Accession Date: February 6, 2019
Gender: -
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 0.97
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.948T>Gp.Asp316Glumissense variantMODERATEcontig7001950690

IGV:Start|Jump

A/C

NGS:0.456

C90:0.000

0.456
PKSG-2b

UNIPROT

c.945T>Gp.Ser315Argmissense variantMODERATEcontig7001950693

IGV:Start|Jump

A/C

NGS:0.454

C90:0.000

0.454
PKSG-2b

UNIPROT

c.944G>Ap.Ser315Asnmissense variantMODERATEcontig7001950694

IGV:Start|Jump

C/T

NGS:0.445

C90:0.000

0.445
PKSG-2b

UNIPROT

c.934C>Gp.His312Aspmissense variantMODERATEcontig7001950704

IGV:Start|Jump

G/C

NGS:0.410

C90:0.000

0.41
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-2b

UNIPROT

c.-2_1dupATAstart lost&conservative inframe insertionHIGHcontig7001951880

IGV:Start|Jump

A/ATAT

NGS:0.410

C90:0.000

0.41
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
PKSG-4b

UNIPROT

c.352_355delACAGp.Thr118fsframeshift variantHIGHcontig7002721317

IGV:Start|Jump

CCTGT/C

NGS:0.529

C90:0.000

0.529
aPT1

UNIPROT

c.629C>Tp.Thr210Ilemissense variantMODERATEcontig1212840237

IGV:Start|Jump

C/T

NGS:0.561

C90:0.598

0.561
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805


NEAREST GENETIC RELATIVES TO Cbot-2019-006:
# Relative Genetic Distance
1 RSP11222-Glueberry OG 6.02
2 RSP11092-RKM-2018-001 6.47
3 RSP11000-Liberty Haze 6.47
4 RSP11184-Domnesia 6.69
5 RSP10991-Golden Goat 2 6.85
6 RSP10755-Recon 6.85
7 RSP11041-Gold Cracker 6.9
8 RSP11122-RKM-2018-030 6.98
9 RSP10946-Liberty Haze 7.03
10 RSP10942-Erez 7.07
11 RSP11258-UP All Day Jay 7.1
12 RSP10603-Black Jack 7.12
13 RSP10763-Serious Happiness 7.14
14 RSP11171-Alaska USA 7.15
15 RSP10989-UP Sunrise 7.2
16 RSP11048-Gold Cracker 7.21
17 RSP11346-BLACK JACK 7.26
18 RSP11243-Doug's Varin 7.3
19 RSP11120-RKM-2018-028 7.3
20 RSP11013-Durban Poison 1 7.34
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11000-Liberty Haze 6.66
2 RSP10755-Recon 6.75
3 RSP10991-Golden Goat 2 6.91
4 RSP11125-RKM-2018-033 7.27
5 RSP10684-Blueberry Cheesecake 7.3
6 RSP11048-Gold Cracker 7.32
7 RSP11120-RKM-2018-028 7.44
8 RSP11112-RKM-2018-020 7.6
9 RSP11034-Italian Kiss 7.6
10 RSP11035-Black Beauty 7.65
11 RSP11014-Durban Poison 7.85
12 RSP10989-UP Sunrise 7.86
13 RSP11050-Hermaphrodite ResearchSample2 7.87
14 RSP11121-RKM-2018-029 7.9
15 RSP11115-RKM-2018-023 7.93
16 RSP11114-RKM-2018-022 7.96
17 RSP11124-RKM-2018-032 8.09
18 RSP11038-Skunk 18 8.11
19 RSP11100-RKM-2018-009 8.18
20 RSP11110-RKM-2018-018 8.19
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR4451143 114 76
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495170 10 8

Blockchain Registration Information:

Transaction ID: 5535236153dd1e3c9655467bea1e08a7b07248bb47b1ce682cf139e5ddccf688
Stamping Certificate: PDF
SHASUM Hash: e261302f94f0a0a734b0f5b1036ca425e790a8f8a94345767281e9cb2c7b2ad8