Cherry

RSP11143
StrainSEEK Cannabis Certification Report

Accession Date:

April 17, 2019

General Information

Strain: Cherry
Sample: VR3B
RSP ID: RSP11143
Grower: GHA
Accession Date: April 17, 2019
Gender: Female
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 1.83
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type III

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.948T>Gp.Asp316Glumissense variantMODERATEcontig7001950690

IGV:Start|Jump

A/C

NGS:0.456

C90:0.000

0.456
PKSG-2b

UNIPROT

c.945T>Gp.Ser315Argmissense variantMODERATEcontig7001950693

IGV:Start|Jump

A/C

NGS:0.454

C90:0.000

0.454
PKSG-2b

UNIPROT

c.944G>Ap.Ser315Asnmissense variantMODERATEcontig7001950694

IGV:Start|Jump

C/T

NGS:0.445

C90:0.000

0.445
PKSG-2b

UNIPROT

c.934C>Gp.His312Aspmissense variantMODERATEcontig7001950704

IGV:Start|Jump

G/C

NGS:0.410

C90:0.000

0.41
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-2b

UNIPROT

c.-2_1dupATAstart lost&conservative inframe insertionHIGHcontig7001951880

IGV:Start|Jump

A/ATAT

NGS:0.410

C90:0.000

0.41
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
PKSG-4b

UNIPROT

c.419A>Gp.Asp140Glymissense variantMODERATEcontig7002721254

IGV:Start|Jump

T/C

NGS:0.430

C90:0.440

0.43
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
HDS-2

UNIPROT

c.127T>Gp.Ser43Alamissense variantMODERATEcontig951989794

IGV:Start|Jump

T/G

NGS:0.721

C90:0.000

0.721


NEAREST GENETIC RELATIVES TO Cherry:
# Relative Genetic Distance
1 RSP11145-Cherry Wine 6.59
2 RSP11147-Otto 6.78
3 RSP11305-Cherry Wine 6.92
4 RSP11141-2nd Gen Cherry 6.94
5 RSP11307-Cherry Wine 7.04
6 RSP11361-FL30 7.18
7 RSP10941-Midnight 7.32
8 RSP11013-Durban Poison 1 7.37
9 RSP11173-RAPHAEL 4 7.49
10 RSP10085-RINGO S ANGEL 7.51
11 RSP11129-Cbot-2019-001 7.58
12 RSP11284-Queen Dream CBG 7.62
13 RSP10996-Durban Poison 1 7.66
14 RSP11172-RAPHAEL 2 7.73
15 RSP11201-BlueBerry Cheesecake x JL Male 7.78
16 RSP10938-Avidekel 7.81
17 RSP11277-Queen Dream CBG 7.82
18 RSP11014-Durban Poison 7.83
19 RSP11289-Queen Dream 7.93
20 RSP11281-Queen Dream CBG 7.95
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11129-Cbot-2019-001 7.57
2 RSP11014-Durban Poison 7.98
3 RSP11000-Liberty Haze 8.48
4 RSP10672-Blueberry Cheesecake 8.67
5 RSP10989-UP Sunrise 8.76
6 RSP10684-Blueberry Cheesecake 8.99
7 RSP11142-Cherry 9.08
8 RSP10755-Recon 9.4
9 RSP11048-Gold Cracker 9.74
10 RSP11002-CST 9.77
11 RSP11134-Cbot-2019-006 9.79
12 RSP11094-RKM-2018-003 9.82
13 RSP10991-Golden Goat 2 9.89
14 RSP11115-RKM-2018-023 9.93
15 RSP10105-QUEEN JESUS 9.94
16 RSP11121-RKM-2018-029 9.97
17 RSP10653-Jiangji 9.99
18 RSP11119-RKM-2018-027 10.03
19 RSP10667-Tygra 10.14
20 RSP10659-Tisza 10.16
MOST GENETICALLY DISTANT STRAINS FROM Cherry:
# Strain Genetic Distance
1 RSP11314-Cherry Blossom 13.82
2 RSP11333-Cherry Blossom 12.86
3 RSP11118-RKM-2018-026 12.64
4 RSP11103-RKM-2018-012 12.53
5 RSP11185-Chem 91 12.48
6 RSP11075-JL yellow 12.39
7 RSP11317-Cherry Blossom 12.28
8 RSP11213-80E 12.13
9 RSP11324-Cherry Blossom 12.12
10 RSP11128-Kush Hemp E1 12.11
11 RSP11190-Red Eye OG 12.09
12 RSP11197-JL 3rd Gen Mother 12.01
13 RSP11214-JL 3rd Gen Mother 11.98
14 RSP11340-LEMONCAKE 11.93
15 RSP11266-Abacus 11.9
16 RSP11231-Gorilla Cookies 11.88
17 RSP11211-80E 11.84
18 RSP11212-80E 11.84
19 RSP10837-Skywalker OG 11.82
20 RSP11353-Rugburn OG 11.8
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR8346596 85 59

Blockchain Registration Information:

Transaction ID: 62c6ef6ed8d28ab0e46405c889238443fc6c8463419ea072bdf6fb884ba152b3
Stamping Certificate: PDF
SHASUM Hash: 9409aefd6f5437db28158f7a9d77acde0844025906e851921d1d0086c216222d