JL 4th Gen 7

RSP11153
StrainSEEK Cannabis Certification Report

Accession Date:

June 3, 2019

General Information

Strain: JL 4th Gen 7
RSP ID: RSP11153
Grower: Kevin Mckernan
Accession Date: June 3, 2019
Gender: -
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 1.27
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type II

Bt/Bd ALLELE COVERAGE

What does this visualization mean?

CBCAS COVERAGE


What does this visualization mean?

Y-RATIO DISTRIBUTION


What does this visualization mean?


VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCASc.998C>Gp.Pro333Argmissense variantMODERATEcontig7414416830

IGV:Start|Jump

G/C

NGS:0.182

C90:0.000

0.182



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PHL-2

UNIPROT

c.1057A>Gp.Arg353Glymissense variantMODERATEcontig2621340335

IGV:Start|Jump

A/G

NGS:0.096

C90:0.555

0.096
PHL-2

UNIPROT

c.1096G>Ap.Ala366Thrmissense variantMODERATEcontig2621340374

IGV:Start|Jump

G/A

NGS:0.090

C90:0.531

0.09
PHL-2

UNIPROT

c.2756A>Cp.Glu919Alamissense variantMODERATEcontig2621342799

IGV:Start|Jump

A/C

NGS:0.064

C90:0.675

0.064
PHL-2

UNIPROT

c.2783G>Ap.Ser928Asnmissense variantMODERATEcontig2621342826

IGV:Start|Jump

G/A

NGS:0.107

C90:0.890

0.107
PHL-2

UNIPROT

c.3027G>Tp.Lys1009Asnmissense variantMODERATEcontig2621343070

IGV:Start|Jump

G/T

NGS:0.055

C90:0.311

0.055
PHL-2

UNIPROT

c.3033T>Gp.Cys1011Trpmissense variantMODERATEcontig2621343076

IGV:Start|Jump

T/G

NGS:0.055

C90:0.292

0.055
PHL-2

UNIPROT

c.3202A>Cp.Thr1068Promissense variantMODERATEcontig2621343245

IGV:Start|Jump

A/C

NGS:0.053

C90:0.000

0.053
PHL-2

UNIPROT

c.3209A>Gp.Gln1070Argmissense variantMODERATEcontig2621343252

IGV:Start|Jump

A/G

NGS:0.103

C90:0.885

0.103
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
PKSG-4b

UNIPROT

c.419A>Gp.Asp140Glymissense variantMODERATEcontig7002721254

IGV:Start|Jump

T/C

NGS:0.430

C90:0.440

0.43
FAD2-2

UNIPROT

c.64G>Tp.Ala22Sermissense variantMODERATEcontig831803305

IGV:Start|Jump

C/A

NGS:0.048

C90:0.000

0.048
ELF3

UNIPROT

c.358G>Ap.Gly120Argmissense variantMODERATEcontig97242064

IGV:Start|Jump

G/A

NGS:0.099

C90:0.493

0.099
ELF3

UNIPROT

c.752G>Tp.Gly251Valmissense variantMODERATEcontig97242458

IGV:Start|Jump

G/T

NGS:0.022

C90:0.139

0.022
ELF3

UNIPROT

c.772A>Gp.Ser258Glymissense variantMODERATEcontig97242478

IGV:Start|Jump

A/G

NGS:0.112

C90:0.000

0.112
ELF3

UNIPROT

c.812G>Cp.Gly271Alamissense variantMODERATEcontig97242518

IGV:Start|Jump

G/C

NGS:0.114

C90:0.938

0.114
ELF3

UNIPROT

c.1466G>Ap.Ser489Asnmissense variantMODERATEcontig97244297

IGV:Start|Jump

G/A

NGS:0.123

C90:0.000

0.123
ELF3

UNIPROT

c.2198G>Tp.Arg733Leumissense variantMODERATEcontig97245029

IGV:Start|Jump

G/T

NGS:0.125

C90:0.531

0.125
aPT4

UNIPROT

c.97T>Cp.Tyr33Hismissense variantMODERATEcontig1212828753

IGV:Start|Jump

T/C

NGS:0.439

C90:0.000

0.439
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
aPT1

UNIPROT

c.629C>Tp.Thr210Ilemissense variantMODERATEcontig1212840237

IGV:Start|Jump

C/T

NGS:0.561

C90:0.598

0.561
aPT1

UNIPROT

c.864C>Gp.Asn288Lysmissense variantMODERATEcontig1212842407

IGV:Start|Jump

C/G

NGS:0.075

C90:0.062

0.075
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
AAE1-2

UNIPROT

c.331A>Gp.Asn111Aspmissense variantMODERATEcontig81209293

IGV:Start|Jump

A/G

NGS:0.123

C90:0.000

0.123
AAE1-2

UNIPROT

c.884C>Tp.Thr295Ilemissense variantMODERATEcontig81209846

IGV:Start|Jump

C/T

NGS:0.042

C90:0.000

0.042
AAE1-2

UNIPROT

c.1006A>Gp.Lys336Glumissense variantMODERATEcontig81209968

IGV:Start|Jump

A/G

NGS:0.116

C90:0.000

0.116
AAE1-2

UNIPROT

c.1415G>Ap.Ser472Asnmissense variantMODERATEcontig81210377

IGV:Start|Jump

G/A

NGS:0.070

C90:0.000

0.07
AAE1-2

UNIPROT

c.1417A>Gp.Thr473Alamissense variantMODERATEcontig81210379

IGV:Start|Jump

A/G

NGS:0.070

C90:0.000

0.07
AAE1-2

UNIPROT

c.1434G>Tp.Glu478Aspmissense variantMODERATEcontig81210396

IGV:Start|Jump

G/T

NGS:0.075

C90:0.000

0.075
PHL-1

UNIPROT

c.2651C>Tp.Ala884Valmissense variantMODERATEcontig14391487146

IGV:Start|Jump

G/A

NGS:0.044

C90:0.622

0.044
PHL-1

UNIPROT

c.2623A>Gp.Thr875Alamissense variantMODERATEcontig14391487174

IGV:Start|Jump

T/C

NGS:0.123

C90:0.000

0.123
PHL-1

UNIPROT

c.2561A>Tp.Asn854Ilemissense variantMODERATEcontig14391487236

IGV:Start|Jump

T/A

NGS:0.046

C90:0.612

0.046
PHL-1

UNIPROT

c.2551A>Gp.Thr851Alamissense variantMODERATEcontig14391487246

IGV:Start|Jump

T/C

NGS:0.116

C90:0.890

0.116
PHL-1

UNIPROT

c.1387A>Gp.Thr463Alamissense variantMODERATEcontig14391489811

IGV:Start|Jump

T/C

NGS:0.107

C90:0.904

0.107
TFL1

UNIPROT

c.47_48dupATp.Val17fsframeshift variantHIGHcontig1636521258

IGV:Start|Jump

C/CAT

NGS:0.026

C90:0.211

0.026
HDS-1

UNIPROT

c.136G>Ap.Val46Ilemissense variantMODERATEcontig1891889256

IGV:Start|Jump

C/T

NGS:0.088

C90:0.593

0.088
HDS-1

UNIPROT

c.56C>Gp.Ala19Glymissense variantMODERATEcontig1891889336

IGV:Start|Jump

G/C

NGS:0.125

C90:0.943

0.125
AAE1-3

UNIPROT

c.667G>Ap.Val223Ilemissense variantMODERATEcontig9761083187

IGV:Start|Jump

C/T

NGS:0.048

C90:0.000

0.048
AAE1-3

UNIPROT

c.634G>Cp.Gly212Argmissense variantMODERATEcontig9761083220

IGV:Start|Jump

C/G

NGS:0.116

C90:0.000

0.116
AAE1-3

UNIPROT

c.475G>Ap.Gly159Argmissense variantMODERATEcontig9761083550

IGV:Start|Jump

C/T

NGS:0.048

C90:0.000

0.048
AAE1-3

UNIPROT

c.416T>Cp.Leu139Promissense variantMODERATEcontig9761083609

IGV:Start|Jump

A/G

NGS:0.061

C90:0.000

0.061
AAE1-3

UNIPROT

c.382T>Cp.Tyr128Hismissense variantMODERATEcontig9761083643

IGV:Start|Jump

A/G

NGS:0.072

C90:0.000

0.072
AAE1-3

UNIPROT

c.296C>Tp.Pro99Leumissense variantMODERATEcontig9761083729

IGV:Start|Jump

G/A

NGS:0.046

C90:0.000

0.046
AAE1-3

UNIPROT

c.293A>Gp.Asp98Glymissense variantMODERATEcontig9761083732

IGV:Start|Jump

T/C

NGS:0.068

C90:0.000

0.068
AAE1-3

UNIPROT

c.284A>Tp.Glu95Valmissense variantMODERATEcontig9761083741

IGV:Start|Jump

T/A

NGS:0.053

C90:0.000

0.053
AAE1-3

UNIPROT

c.181G>Ap.Val61Ilemissense variantMODERATEcontig9761083894

IGV:Start|Jump

C/T

NGS:0.055

C90:0.000

0.055
AAE1-3

UNIPROT

c.167A>Gp.Glu56Glymissense variantMODERATEcontig9761083908

IGV:Start|Jump

T/C

NGS:0.070

C90:0.000

0.07
AAE1-3

UNIPROT

c.125A>Gp.Glu42Glymissense variantMODERATEcontig9761083950

IGV:Start|Jump

T/C

NGS:0.064

C90:0.000

0.064
AAE1-3

UNIPROT

c.79A>Gp.Thr27Alamissense variantMODERATEcontig9761083996

IGV:Start|Jump

T/C

NGS:0.068

C90:0.000

0.068
AAE1-3

UNIPROT

c.52G>Ap.Gly18Sermissense variantMODERATEcontig9761084023

IGV:Start|Jump

C/T

NGS:0.064

C90:0.000

0.064
AAE1-3

UNIPROT

c.3G>Ap.Met1?start lostHIGHcontig9761084072

IGV:Start|Jump

C/T

NGS:0.046

C90:0.416

0.046
GGR

UNIPROT

c.317C>Tp.Pro106Leumissense variantMODERATEcontig2282549309

IGV:Start|Jump

C/T

NGS:0.035

C90:0.220

0.035
GGR

UNIPROT

c.456T>Ap.His152Glnmissense variantMODERATEcontig2282549448

IGV:Start|Jump

T/A

NGS:0.068

C90:0.000

0.068
GGR

UNIPROT

c.460G>Ap.Asp154Asnmissense variantMODERATEcontig2282549452

IGV:Start|Jump

G/A

NGS:0.070

C90:0.000

0.07
GGR

UNIPROT

c.704A>Tp.His235Leumissense variantMODERATEcontig2282549696

IGV:Start|Jump

A/T

NGS:0.121

C90:0.000

0.121
GGR

UNIPROT

c.810A>Tp.Glu270Aspmissense variantMODERATEcontig2282549802

IGV:Start|Jump

A/T

NGS:0.024

C90:0.000

0.024


NEAREST GENETIC RELATIVES TO JL 4th Gen 7:
# Relative Genetic Distance
1 RSP11243-Doug's Varin 4.11
2 RSP10763-Serious Happiness 4.38
3 RSP11004-Blue Dream 4.6
4 RSP10684-Blueberry Cheesecake 4.67
5 RSP11184-Domnesia 4.71
6 RSP11127-Jamaican Lions Ancestor 4.8
7 RSP11017-Blue Dream 4.83
8 RSP11011-Super Blue Dream 4.86
9 RSP11193-JL 4th Gen 1 5.09
10 RSP11199-JL 4th Gen 5 5.1
11 RSP11010-Blue Dream 5.1
12 RSP11198-JL 4th Gen 4 5.12
13 RSP11194-JL 4th Gen 2 5.15
14 RSP11195-JL 4th Gen 3 5.16
15 RSP11007-Blue Dream 5.2
16 RSP11362-NSPM1 5.26
17 RSP11006-Blue Dream 5.32
18 RSP11008-Blue Dream 5.47
19 RSP11009-Blue Dream 5.49
20 RSP11214-JL 3rd Gen Mother 5.84
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP10684-Blueberry Cheesecake 4.47
2 RSP10989-UP Sunrise 6.03
3 RSP11014-Durban Poison 6.35
4 RSP11048-Gold Cracker 6.43
5 RSP11000-Liberty Haze 6.53
6 RSP10997-Kimbo Slice 6.63
7 RSP11034-Italian Kiss 6.66
8 RSP11033-Blue Dream 6.76
9 RSP11050-Hermaphrodite ResearchSample2 6.79
10 RSP11075-JL yellow 6.82
11 RSP10991-Golden Goat 2 6.91
12 RSP10755-Recon 6.94
13 RSP11002-CST 6.98
14 RSP10680-Blueberry Cheesecake 7.03
15 RSP11119-RKM-2018-027 7.08
16 RSP11115-RKM-2018-023 7.21
17 RSP11112-RKM-2018-020 7.34
18 RSP11121-RKM-2018-029 7.35
19 RSP11123-RKM-2018-031 7.37
20 RSP11124-RKM-2018-032 7.45
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR4451145 81 59
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495262 11 11

Blockchain Registration Information:

Transaction ID: 5d79bb3a38e81a6896c2e5283e5a063f1b8f04f948a16167a966c502655d0f8c
Stamping Certificate: PDF
SHASUM Hash: 044652624fb8495d2afa4cd032b8007a196d6a6e6b47eef85828b12a1b2be353