Casco Kush

RSP11167
StrainSEEK Cannabis Certification Report

Accession Date:

June 19, 2019

General Information

Strain: Casco Kush
Sample: CK-19
RSP ID: RSP11167
Grower: Elevation Science
Accession Date: June 19, 2019
Gender: Female
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 1.74
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCASc.998C>Gp.Pro333Argmissense variantMODERATEcontig7414416830

IGV:Start|Jump

G/C

NGS:0.182

C90:0.000

0.182
THCASc.749C>Ap.Ala250Aspmissense variantMODERATEcontig7414417079

IGV:Start|Jump

G/T

NGS:0.127

C90:0.632

0.127



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
DXR-2

UNIPROT

c.1319T>Cp.Ile440Thrmissense variantMODERATEcontig380285250

IGV:Start|Jump

A/G

NGS:0.480

C90:0.000

0.48
aPT4

UNIPROT

c.235_236delGTp.Val79fsframeshift variantHIGHcontig1212829030

IGV:Start|Jump

ATG/A

NGS:0.417

C90:0.000

0.417
aPT4

UNIPROT

c.238delTp.Ser80fsframeshift variantHIGHcontig1212829034

IGV:Start|Jump

AT/A

NGS:0.421

C90:0.000

0.421
aPT4

UNIPROT

c.302A>Gp.Asn101Sermissense variantMODERATEcontig1212829099

IGV:Start|Jump

A/G

NGS:0.349

C90:0.000

0.349
aPT4

UNIPROT

c.1168T>Cp.Tyr390Hismissense variantMODERATEcontig1212833503

IGV:Start|Jump

T/C

NGS:0.546

C90:0.000

0.546
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
aPT1

UNIPROT

c.629C>Tp.Thr210Ilemissense variantMODERATEcontig1212840237

IGV:Start|Jump

C/T

NGS:0.561

C90:0.598

0.561
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
HDS-2

UNIPROT

c.127T>Gp.Ser43Alamissense variantMODERATEcontig951989794

IGV:Start|Jump

T/G

NGS:0.721

C90:0.000

0.721


NEAREST GENETIC RELATIVES TO Casco Kush:
# Relative Genetic Distance
1 RSP11104-RKM-2018-013 4.66
2 RSP10837-Skywalker OG 4.67
3 RSP11072-SFVxTK 4.71
4 RSP11190-Red Eye OG 4.95
5 RSP11231-Gorilla Cookies 5.35
6 RSP11189-Tahoe OG 5.57
7 RSP11353-Rugburn OG 5.59
8 RSP11126-RKM-2018-034 5.73
9 RSP11355-SHERBERT 6.02
10 RSP11163-North Traveler 6.03
11 RSP11265-Pure Power Plant 6.19
12 RSP11230-Jilly bean 6.43
13 RSP11184-Domnesia 6.48
14 RSP11071-Sunday Driver 6.54
15 RSP11073-Pie Hoe 6.57
16 RSP10763-Serious Happiness 6.65
17 RSP11099-RKM-2018-008 6.69
18 RSP11363-Whitey 6.72
19 RSP11362-NSPM1 6.75
20 RSP10988-The Gift 6.89
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP10837-Skywalker OG 4.65
2 RSP11126-RKM-2018-034 5.79
3 RSP11073-Pie Hoe 6.7
4 RSP10988-The Gift 6.72
5 RSP11118-RKM-2018-026 7.09
6 RSP11050-Hermaphrodite ResearchSample2 7.34
7 RSP11000-Liberty Haze 7.35
8 RSP10997-Kimbo Slice 7.36
9 RSP11124-RKM-2018-032 7.46
10 RSP10684-Blueberry Cheesecake 7.52
11 RSP11112-RKM-2018-020 7.56
12 RSP10755-Recon 7.76
13 RSP11014-Durban Poison 7.85
14 RSP10991-Golden Goat 2 8.03
15 RSP11048-Gold Cracker 8.3
16 RSP11049-Hermaphrodite Research Sample1 8.47
17 RSP11125-RKM-2018-033 8.57
18 RSP11093-RKM-2018-002 8.67
19 RSP10680-Blueberry Cheesecake 8.73
20 RSP11096-RKM-2018-005 8.76
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR8346850 92 67
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495285 13 12

Blockchain Registration Information:

Transaction ID: 1347aaf0c42a99388899a930de5529d5f67cb8b3729263fa3829bb649583d5e8
Stamping Certificate: PDF
SHASUM Hash: 5caaac57921734a9340380b46ba9fe7c4a3f9503c6fc5d79fe6783ed1c7f732c