AVIDEKEL 2.0

RSP11174
StrainSEEK Cannabis Certification Report

Accession Date:

June 25, 2019

General Information

Strain: AVIDEKEL 2.0
Sample: AVI/MIDNIGHT
RSP ID: RSP11174
Grower: TIkun Olam
Accession Date: June 25, 2019
Gender: Female
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 1.22
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type II

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCASc.373G>Cp.Val125Leumissense variantMODERATEcontig7414417455

IGV:Start|Jump

C/G

NGS:0.050

C90:0.000

0.05



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-4a

UNIPROT

c.617A>Gp.Tyr206Cysmissense variantMODERATEcontig7001938028

IGV:Start|Jump

A/G

NGS:0.075

C90:0.000

0.075
PKSG-4a

UNIPROT

c.626_628delATAp.Asn209deldisruptive inframe deletionMODERATEcontig7001938032

IGV:Start|Jump

CAAT/C

NGS:0.075

C90:0.000

0.075
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.948T>Gp.Asp316Glumissense variantMODERATEcontig7001950690

IGV:Start|Jump

A/C

NGS:0.456

C90:0.000

0.456
PKSG-2b

UNIPROT

c.945T>Gp.Ser315Argmissense variantMODERATEcontig7001950693

IGV:Start|Jump

A/C

NGS:0.454

C90:0.000

0.454
PKSG-2b

UNIPROT

c.944G>Ap.Ser315Asnmissense variantMODERATEcontig7001950694

IGV:Start|Jump

C/T

NGS:0.445

C90:0.000

0.445
PKSG-2b

UNIPROT

c.934C>Gp.His312Aspmissense variantMODERATEcontig7001950704

IGV:Start|Jump

G/C

NGS:0.410

C90:0.000

0.41
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-2b

UNIPROT

c.-2_1dupATAstart lost&conservative inframe insertionHIGHcontig7001951880

IGV:Start|Jump

A/ATAT

NGS:0.410

C90:0.000

0.41
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
PKSG-4b

UNIPROT

c.419A>Gp.Asp140Glymissense variantMODERATEcontig7002721254

IGV:Start|Jump

T/C

NGS:0.430

C90:0.440

0.43
PKSG-4b

UNIPROT

c.352_355delACAGp.Thr118fsframeshift variantHIGHcontig7002721317

IGV:Start|Jump

CCTGT/C

NGS:0.529

C90:0.000

0.529
PKSG-4b

UNIPROT

c.323A>Gp.Glu108Glymissense variantMODERATEcontig7002721350

IGV:Start|Jump

T/C

NGS:0.469

C90:0.000

0.469
aPT4

UNIPROT

c.235_236delGTp.Val79fsframeshift variantHIGHcontig1212829030

IGV:Start|Jump

ATG/A

NGS:0.417

C90:0.000

0.417
aPT4

UNIPROT

c.238delTp.Ser80fsframeshift variantHIGHcontig1212829034

IGV:Start|Jump

AT/A

NGS:0.421

C90:0.000

0.421
aPT4

UNIPROT

c.302A>Gp.Asn101Sermissense variantMODERATEcontig1212829099

IGV:Start|Jump

A/G

NGS:0.349

C90:0.000

0.349
aPT4

UNIPROT

c.1168T>Cp.Tyr390Hismissense variantMODERATEcontig1212833503

IGV:Start|Jump

T/C

NGS:0.546

C90:0.000

0.546
aPT1

UNIPROT

c.629C>Tp.Thr210Ilemissense variantMODERATEcontig1212840237

IGV:Start|Jump

C/T

NGS:0.561

C90:0.598

0.561
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
HDS-2

UNIPROT

c.127T>Gp.Ser43Alamissense variantMODERATEcontig951989794

IGV:Start|Jump

T/G

NGS:0.721

C90:0.000

0.721


NEAREST GENETIC RELATIVES TO AVIDEKEL 2.0:
# Relative Genetic Distance
1 RSP11129-Cbot-2019-001 5.47
2 RSP11350-101st AIRBORN CBD 5.63
3 RSP11349-CANNATONIC 6.06
4 RSP11278-Queen Dream 6.07
5 RSP11133-Cbot-2019-005 6.31
6 RSP10989-UP Sunrise 6.81
7 RSP11131-Cbot-2019-003 7.04
8 RSP11148-Wife 7.49
9 RSP11297-Queen Dream CBG 7.51
10 RSP11293-Queen Dream CBG 7.52
11 RSP11351-T S A G E 7.81
12 RSP11301-Cherry Blossom 7.91
13 RSP11009-Blue Dream 8.03
14 RSP11295-Queen Dream CBG 8.03
15 RSP11007-Blue Dream 8.07
16 RSP10085-RINGO S ANGEL 8.1
17 RSP11006-Blue Dream 8.2
18 RSP11275-Queen Dream CBG 8.22
19 RSP11004-Blue Dream 8.31
20 RSP11000-Liberty Haze 8.42
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11129-Cbot-2019-001 5.66
2 RSP11133-Cbot-2019-005 6.4
3 RSP10989-UP Sunrise 6.92
4 RSP11132-Cbot-2019-004 8.42
5 RSP11033-Blue Dream 8.82
6 RSP11000-Liberty Haze 8.92
7 RSP11120-RKM-2018-028 9.22
8 RSP11143-Cherry 9.28
9 RSP11134-Cbot-2019-006 9.35
10 RSP10684-Blueberry Cheesecake 9.43
11 RSP11128-Kush Hemp E1 9.52
12 RSP11110-RKM-2018-018 9.72
13 RSP10991-Golden Goat 2 9.92
14 RSP11100-RKM-2018-009 9.99
15 RSP10755-Recon 10.02
16 RSP10997-Kimbo Slice 10.12
17 RSP11034-Italian Kiss 10.17
18 RSP11112-RKM-2018-020 10.18
19 RSP11115-RKM-2018-023 10.2
20 RSP11125-RKM-2018-033 10.24
MOST GENETICALLY DISTANT STRAINS FROM AVIDEKEL 2.0:
# Strain Genetic Distance
1 RSP11190-Red Eye OG 13.74
2 RSP11326-Cherry Blossom 13.71
3 RSP11317-Cherry Blossom 13.43
4 RSP11352-Star Dawg 13.42
5 RSP11335-Cherry Blossom 13.34
6 RSP11308-Cherry Blossom 13.32
7 RSP11209-Eletta Campana 13.14
8 RSP11114-RKM-2018-022 13.12
9 RSP11205-Feral 13.09
10 RSP11336-White Label 1 13.03
11 RSP11210-Tiborszallasie 13
12 RSP11242-MENDO BREATH 12.99
13 RSP11118-RKM-2018-026 12.86
14 RSP11208-CS 12.82
15 RSP11126-RKM-2018-034 12.79
16 RSP11206-Feral 12.77
17 RSP11231-Gorilla Cookies 12.77
18 RSP11111-RKM-2018-019 12.75
19 RSP11202-Carmagnola 12.74
20 RSP11341-Garlic 12.7
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR4448694 98 77
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495181 14 14

Blockchain Registration Information:

Transaction ID: 6b98482c958fada01949362dea4a9f545074a2b568df341b44edf592da59fc7a
Stamping Certificate: PDF
SHASUM Hash: ee71cb9ffd2a8d9e64028186c2887ed661b40e0dce9e0f522b5d731fd0c575e8