Tahoe OG

RSP11189
StrainSEEK Cannabis Certification Report

Accession Date:

June 27, 2019

General Information

Strain: Tahoe OG
RSP ID: RSP11189
Grower: Salmon Creek, CA
Accession Date: June 27, 2019
Gender: Male
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 3.06
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I

Bt/Bd ALLELE COVERAGE

What does this visualization mean?


VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2b

UNIPROT

c.774G>Ap.Met258Ilemissense variantMODERATEcontig7001950864

IGV:Start|Jump

C/T

NGS:0.366

C90:0.947

0.366
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
DXR-2

UNIPROT

c.1319T>Cp.Ile440Thrmissense variantMODERATEcontig380285250

IGV:Start|Jump

A/G

NGS:0.480

C90:0.000

0.48
FAD2-2

UNIPROT

c.164A>Gp.His55Argmissense variantMODERATEcontig831803205

IGV:Start|Jump

T/C

NGS:0.037

C90:0.000

0.037
FAD2-2

UNIPROT

c.161T>Ap.Leu54Hismissense variantMODERATEcontig831803208

IGV:Start|Jump

A/T

NGS:0.156

C90:0.000

0.156
FAD2-2

UNIPROT

c.64G>Tp.Ala22Sermissense variantMODERATEcontig831803305

IGV:Start|Jump

C/A

NGS:0.048

C90:0.000

0.048
ELF3

UNIPROT

c.358G>Ap.Gly120Argmissense variantMODERATEcontig97242064

IGV:Start|Jump

G/A

NGS:0.099

C90:0.493

0.099
ELF3

UNIPROT

c.520A>Cp.Asn174Hismissense variantMODERATEcontig97242226

IGV:Start|Jump

A/C

NGS:0.094

C90:0.502

0.094
ELF3

UNIPROT

c.1230-2_1230-1delAGsplice acceptor variant&intron variantHIGHcontig97243676

IGV:Start|Jump

TAG/T

NGS:0.088

C90:0.450

0.088
ELF3

UNIPROT

c.1466G>Ap.Ser489Asnmissense variantMODERATEcontig97244297

IGV:Start|Jump

G/A

NGS:0.123

C90:0.000

0.123
ELF3

UNIPROT

c.1630A>Gp.Thr544Alamissense variantMODERATEcontig97244461

IGV:Start|Jump

A/G

NGS:0.103

C90:0.545

0.103
ELF3

UNIPROT

c.1803_1805delTCAp.His601deldisruptive inframe deletionMODERATEcontig97244625

IGV:Start|Jump

ACAT/A

NGS:0.092

C90:0.000

0.092
ELF3

UNIPROT

c.1966C>Gp.Pro656Alamissense variantMODERATEcontig97244797

IGV:Start|Jump

C/G

NGS:0.123

C90:0.632

0.123
ELF3

UNIPROT

c.2141C>Gp.Pro714Argmissense variantMODERATEcontig97244972

IGV:Start|Jump

C/G

NGS:0.088

C90:0.335

0.088
ELF3

UNIPROT

c.2198G>Tp.Arg733Leumissense variantMODERATEcontig97245029

IGV:Start|Jump

G/T

NGS:0.125

C90:0.531

0.125
aPT4

UNIPROT

c.16G>Ap.Val6Ilemissense variantMODERATEcontig1212828672

IGV:Start|Jump

G/A

NGS:0.158

C90:0.000

0.158
aPT4

UNIPROT

c.80A>Gp.Lys27Argmissense variantMODERATEcontig1212828736

IGV:Start|Jump

A/G

NGS:0.061

C90:0.000

0.061
aPT4

UNIPROT

c.97T>Cp.Tyr33Hismissense variantMODERATEcontig1212828753

IGV:Start|Jump

T/C

NGS:0.439

C90:0.000

0.439
aPT4

UNIPROT

c.153A>Cp.Lys51Asnmissense variantMODERATEcontig1212828809

IGV:Start|Jump

A/C

NGS:0.375

C90:0.000

0.375
aPT4

UNIPROT

c.202T>Ap.Leu68Ilemissense variantMODERATEcontig1212828858

IGV:Start|Jump

T/A

NGS:0.068

C90:0.000

0.068
aPT4

UNIPROT

c.235_236delGTp.Val79fsframeshift variantHIGHcontig1212829030

IGV:Start|Jump

ATG/A

NGS:0.417

C90:0.000

0.417
aPT4

UNIPROT

c.238delTp.Ser80fsframeshift variantHIGHcontig1212829034

IGV:Start|Jump

AT/A

NGS:0.421

C90:0.000

0.421
aPT4

UNIPROT

c.302A>Gp.Asn101Sermissense variantMODERATEcontig1212829099

IGV:Start|Jump

A/G

NGS:0.349

C90:0.000

0.349
aPT4

UNIPROT

c.916C>Tp.His306Tyrmissense variant&splice region variantMODERATEcontig1212832711

IGV:Start|Jump

C/T

NGS:0.015

C90:0.000

0.015
aPT4

UNIPROT

c.1168T>Cp.Tyr390Hismissense variantMODERATEcontig1212833503

IGV:Start|Jump

T/C

NGS:0.546

C90:0.000

0.546
aPT1

UNIPROT

c.160A>Cp.Thr54Promissense variantMODERATEcontig1212835867

IGV:Start|Jump

A/C

NGS:0.086

C90:0.048

0.086
aPT1

UNIPROT

c.629C>Tp.Thr210Ilemissense variantMODERATEcontig1212840237

IGV:Start|Jump

C/T

NGS:0.561

C90:0.598

0.561
aPT1

UNIPROT

c.670T>Ap.Ser224Thrmissense variantMODERATEcontig1212840278

IGV:Start|Jump

T/A

NGS:0.077

C90:0.000

0.077
aPT1

UNIPROT

c.727G>Tp.Glu243*stop gainedHIGHcontig1212841362

IGV:Start|Jump

G/T

NGS:0.127

C90:0.100

0.127
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
HDS-2

UNIPROT

c.127T>Gp.Ser43Alamissense variantMODERATEcontig951989794

IGV:Start|Jump

T/G

NGS:0.721

C90:0.000

0.721
AAE1-2

UNIPROT

c.331A>Gp.Asn111Aspmissense variantMODERATEcontig81209293

IGV:Start|Jump

A/G

NGS:0.123

C90:0.000

0.123
AAE1-2

UNIPROT

c.884C>Tp.Thr295Ilemissense variantMODERATEcontig81209846

IGV:Start|Jump

C/T

NGS:0.042

C90:0.000

0.042
AAE1-2

UNIPROT

c.948_949insAp.Asp317fsframeshift variantHIGHcontig81209910

IGV:Start|Jump

C/CA

NGS:0.050

C90:0.000

0.05
AAE1-2

UNIPROT

c.952delCp.Gln318fsframeshift variantHIGHcontig81209912

IGV:Start|Jump

AC/A

NGS:0.050

C90:0.000

0.05
AAE1-2

UNIPROT

c.953A>Gp.Gln318Argmissense variantMODERATEcontig81209915

IGV:Start|Jump

A/G

NGS:0.050

C90:0.000

0.05
AAE1-2

UNIPROT

c.955C>Tp.Arg319Cysmissense variantMODERATEcontig81209917

IGV:Start|Jump

C/T

NGS:0.050

C90:0.000

0.05
AAE1-2

UNIPROT

c.1006A>Gp.Lys336Glumissense variantMODERATEcontig81209968

IGV:Start|Jump

A/G

NGS:0.116

C90:0.000

0.116
AAE1-2

UNIPROT

c.1102C>Ap.His368Asnmissense variantMODERATEcontig81210064

IGV:Start|Jump

C/A

NGS:0.033

C90:0.000

0.033
AAE1-2

UNIPROT

c.1415G>Ap.Ser472Asnmissense variantMODERATEcontig81210377

IGV:Start|Jump

G/A

NGS:0.070

C90:0.000

0.07
AAE1-2

UNIPROT

c.1417A>Gp.Thr473Alamissense variantMODERATEcontig81210379

IGV:Start|Jump

A/G

NGS:0.070

C90:0.000

0.07
AAE1-2

UNIPROT

c.1434G>Tp.Glu478Aspmissense variantMODERATEcontig81210396

IGV:Start|Jump

G/T

NGS:0.075

C90:0.000

0.075
AAE1-2

UNIPROT

c.1541T>Cp.Val514Alamissense variantMODERATEcontig81210503

IGV:Start|Jump

T/C

NGS:0.050

C90:0.000

0.05
PHL-1

UNIPROT

c.2623A>Gp.Thr875Alamissense variantMODERATEcontig14391487174

IGV:Start|Jump

T/C

NGS:0.123

C90:0.000

0.123
Edestin

UNIPROT

c.291T>Ap.Cys97*stop gainedHIGHcontig8503064999

IGV:Start|Jump

A/T

NGS:0.002

C90:0.000

0.002
Edestin

UNIPROT

c.40G>Ap.Ala14Thrmissense variantMODERATEcontig8503065250

IGV:Start|Jump

C/T

NGS:0.011

C90:0.000

0.011
Edestin

UNIPROT

c.17C>Tp.Ser6Leumissense variantMODERATEcontig8503065273

IGV:Start|Jump

G/A

NGS:0.011

C90:0.000

0.011
Edestin

UNIPROT

c.16T>Cp.Ser6Promissense variantMODERATEcontig8503065274

IGV:Start|Jump

A/G

NGS:0.059

C90:0.000

0.059
FAD4

UNIPROT

c.121G>Tp.Val41Phemissense variantMODERATEcontig7841690873

IGV:Start|Jump

G/T

NGS:0.044

C90:0.000

0.044
FAD4

UNIPROT

c.220C>Gp.Arg74Glymissense variantMODERATEcontig7841690972

IGV:Start|Jump

C/G

NGS:0.026

C90:0.000

0.026
HDS-1

UNIPROT

c.1378G>Ap.Val460Ilemissense variantMODERATEcontig1891886370

IGV:Start|Jump

C/T

NGS:0.167

C90:0.000

0.167
HDS-1

UNIPROT

c.136G>Ap.Val46Ilemissense variantMODERATEcontig1891889256

IGV:Start|Jump

C/T

NGS:0.088

C90:0.593

0.088
HDS-1

UNIPROT

c.56C>Gp.Ala19Glymissense variantMODERATEcontig1891889336

IGV:Start|Jump

G/C

NGS:0.125

C90:0.943

0.125
HDS-1

UNIPROT

c.-108+1_-108+2insGsplice donor variant&intron variantHIGHcontig1891889975

IGV:Start|Jump

A/AC

NGS:0.217

C90:0.000

0.217
PIE1-2

UNIPROT

c.6773T>Cp.Leu2258Sermissense variantMODERATEcontig14601184314

IGV:Start|Jump

A/G

NGS:0.046

C90:0.675

0.046
PIE1-2

UNIPROT

c.1872T>Ap.Asp624Glumissense variantMODERATEcontig14601190252

IGV:Start|Jump

A/T

NGS:0.086

C90:0.990

0.086
PIE1-2

UNIPROT

c.1289A>Gp.Asp430Glymissense variantMODERATEcontig14601192109

IGV:Start|Jump

T/C

NGS:0.079

C90:0.000

0.079
PIE1-2

UNIPROT

c.637T>Ap.Ser213Thrmissense variantMODERATEcontig14601194421

IGV:Start|Jump

A/T

NGS:0.079

C90:0.885

0.079
EMF2

UNIPROT

c.1415_1416insTTp.His474fsframeshift variantHIGHcontig9543056602

IGV:Start|Jump

A/ATT

NGS:0.007

C90:0.000

0.007
EMF2

UNIPROT

c.1418_1419insACAp.Ser473_His474insGlndisruptive inframe insertionMODERATEcontig9543056605

IGV:Start|Jump

C/CACA

NGS:0.007

C90:0.029

0.007
EMF2

UNIPROT

c.1772A>Gp.Gln591Argmissense variantMODERATEcontig9543059929

IGV:Start|Jump

A/G

NGS:0.092

C90:0.876

0.092
FLD

UNIPROT

c.2981T>Cp.Met994Thrmissense variantMODERATEcontig14502044012

IGV:Start|Jump

A/G

NGS:0.064

C90:0.478

0.064
FLD

UNIPROT

c.2964C>Ap.Asp988Glumissense variantMODERATEcontig14502044029

IGV:Start|Jump

G/T

NGS:0.057

C90:0.464

0.057
FLD

UNIPROT

c.2686G>Ap.Ala896Thrmissense variantMODERATEcontig14502044848

IGV:Start|Jump

C/T

NGS:0.035

C90:0.225

0.035
AAE1-3

UNIPROT

c.722G>Ap.Arg241Lysmissense variantMODERATEcontig9761083132

IGV:Start|Jump

C/T

NGS:0.070

C90:0.000

0.07
AAE1-3

UNIPROT

c.659G>Ap.Arg220Glnmissense variantMODERATEcontig9761083195

IGV:Start|Jump

C/T

NGS:0.077

C90:0.000

0.077
AAE1-3

UNIPROT

c.634G>Cp.Gly212Argmissense variantMODERATEcontig9761083220

IGV:Start|Jump

C/G

NGS:0.116

C90:0.000

0.116
AAE1-3

UNIPROT

c.199A>Gp.Asn67Aspmissense variantMODERATEcontig9761083876

IGV:Start|Jump

T/C

NGS:0.079

C90:0.000

0.079
AAE1-3

UNIPROT

c.188A>Gp.Asn63Sermissense variantMODERATEcontig9761083887

IGV:Start|Jump

T/C

NGS:0.077

C90:0.000

0.077
PIE1-1

UNIPROT

c.100G>Ap.Glu34Lysmissense variantMODERATEcontig12252277786

IGV:Start|Jump

G/A

NGS:0.022

C90:0.478

0.022
PIE1-1

UNIPROT

c.1222C>Gp.Gln408Glumissense variantMODERATEcontig12252281482

IGV:Start|Jump

C/G

NGS:0.096

C90:0.852

0.096
PIE1-1

UNIPROT

c.6725C>Tp.Ala2242Valmissense variantMODERATEcontig12252289290

IGV:Start|Jump

C/T

NGS:0.046

C90:0.737

0.046
GGR

UNIPROT

c.704A>Tp.His235Leumissense variantMODERATEcontig2282549696

IGV:Start|Jump

A/T

NGS:0.121

C90:0.000

0.121
PKSB-3

UNIPROT

c.1652A>Gp.Glu551Glymissense variantMODERATEcontig933339759

IGV:Start|Jump

A/G

NGS:0.088

C90:0.000

0.088
PKSB-3

UNIPROT

c.1901C>Gp.Ala634Glymissense variantMODERATEcontig933340008

IGV:Start|Jump

C/G

NGS:0.059

C90:0.000

0.059


NEAREST GENETIC RELATIVES TO Tahoe OG:
# Relative Genetic Distance
1 RSP11167-Casco Kush 5.57
2 RSP11241-501st OG 6.14
3 RSP11362-NSPM1 6.2
4 RSP11353-Rugburn OG 6.4
5 RSP11113-RKM-2018-021 6.45
6 RSP11124-RKM-2018-032 6.46
7 RSP11243-Doug's Varin 6.47
8 RSP11109-RKM-2018-017 6.5
9 RSP11072-SFVxTK 6.75
10 RSP11186-Mothers Milk 5 6.76
11 RSP10837-Skywalker OG 6.8
12 RSP11184-Domnesia 6.82
13 RSP10988-The Gift 6.83
14 RSP11355-SHERBERT 6.85
15 RSP10684-Blueberry Cheesecake 6.9
16 RSP11000-Liberty Haze 6.91
17 RSP11099-RKM-2018-008 6.95
18 RSP11350-101st AIRBORN CBD 6.95
19 RSP11095-RKM-2018-004 6.96
20 RSP10763-Serious Happiness 7.01
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11124-RKM-2018-032 6.4
2 RSP10988-The Gift 6.56
3 RSP10837-Skywalker OG 6.62
4 RSP10684-Blueberry Cheesecake 6.8
5 RSP11000-Liberty Haze 7.09
6 RSP11112-RKM-2018-020 7.22
7 RSP11096-RKM-2018-005 7.25
8 RSP11118-RKM-2018-026 7.35
9 RSP11125-RKM-2018-033 7.49
10 RSP10997-Kimbo Slice 7.55
11 RSP10680-Blueberry Cheesecake 7.58
12 RSP11073-Pie Hoe 7.88
13 RSP10991-Golden Goat 2 7.92
14 RSP11093-RKM-2018-002 7.92
15 RSP11126-RKM-2018-034 8.04
16 RSP11014-Durban Poison 8.37
17 RSP10551-Sour Raspberry 8.48
18 RSP11049-Hermaphrodite Research Sample1 8.55
19 RSP11121-RKM-2018-029 8.56
20 RSP11048-Gold Cracker 8.59
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR4448669 96 66
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495290 10 9

Blockchain Registration Information:

Transaction ID: 7b93b94b731644b7344333a2d2bea787126857fed397458d098c466a6b07361d
Stamping Certificate: PDF
SHASUM Hash: 5a44717c479ef75e63067ffd82ad3f5be7a95ab3b6ceee9dea4ad8c8b78f0986