JL 4th Gen 2

RSP11194
StrainSEEK Cannabis Certification Report

Accession Date:

June 27, 2019

General Information

Strain: JL 4th Gen 2
RSP ID: RSP11194
Grower: Medicinal Genomics
Accession Date: June 27, 2019
Gender: -
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 0.75
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type II

Bt/Bd ALLELE COVERAGE

What does this visualization mean?


VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSA-3b

UNIPROT

c.298G>Ap.Ala100Thrmissense variantMODERATEcontig7052271640

IGV:Start|Jump

C/T

NGS:0.044

C90:0.177

0.044
EMF1-2

UNIPROT

c.710A>Cp.His237Promissense variantMODERATEcontig885810

IGV:Start|Jump

A/C

NGS:0.090

C90:0.474

0.09
PKSG-2a

UNIPROT

c.774G>Ap.Met258Ilemissense variantMODERATEcontig7001944616

IGV:Start|Jump

C/T

NGS:0.123

C90:0.000

0.123
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.774G>Ap.Met258Ilemissense variantMODERATEcontig7001950864

IGV:Start|Jump

C/T

NGS:0.366

C90:0.947

0.366
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-4b

UNIPROT

c.544G>Tp.Gly182Trpmissense variantMODERATEcontig7002721129

IGV:Start|Jump

C/A

NGS:0.055

C90:0.000

0.055
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
PKSG-4b

UNIPROT

c.352_355delACAGp.Thr118fsframeshift variantHIGHcontig7002721317

IGV:Start|Jump

CCTGT/C

NGS:0.529

C90:0.000

0.529
PKSG-4b

UNIPROT

c.353_354insCCp.Gly119fsframeshift variantHIGHcontig7002721319

IGV:Start|Jump

T/TGG

NGS:0.175

C90:0.000

0.175
PKSG-4b

UNIPROT

c.338G>Ap.Gly113Glumissense variantMODERATEcontig7002721335

IGV:Start|Jump

C/T

NGS:0.046

C90:0.000

0.046
PKSG-4b

UNIPROT

c.323A>Gp.Glu108Glymissense variantMODERATEcontig7002721350

IGV:Start|Jump

T/C

NGS:0.469

C90:0.000

0.469
PKSG-4b

UNIPROT

c.316+2T>Asplice donor variant&intron variantHIGHcontig7002723818

IGV:Start|Jump

A/T

NGS:0.070

C90:0.689

0.07
PKSG-4b

UNIPROT

c.235_239dupAGATTp.Phe80fsframeshift variantHIGHcontig7002724195

IGV:Start|Jump

G/GAATCT

NGS:0.018

C90:0.000

0.018
PKSG-4b

UNIPROT

c.229G>Ap.Gly77Sermissense variantMODERATEcontig7002724206

IGV:Start|Jump

C/T

NGS:0.042

C90:0.000

0.042
PKSG-4b

UNIPROT

c.216G>Cp.Leu72Phemissense variantMODERATEcontig7002724219

IGV:Start|Jump

C/G

NGS:0.044

C90:0.000

0.044
PKSG-4b

UNIPROT

c.206T>Cp.Leu69Sermissense variantMODERATEcontig7002724229

IGV:Start|Jump

A/G

NGS:0.044

C90:0.000

0.044
PKSG-4b

UNIPROT

c.134G>Ap.Arg45Glnmissense variantMODERATEcontig7002724301

IGV:Start|Jump

C/T

NGS:0.018

C90:0.000

0.018
OAC-2

UNIPROT

c.22G>Ap.Val8Ilemissense variantMODERATEcontig931110317

IGV:Start|Jump

C/T

NGS:0.018

C90:0.000

0.018
OAC-1

UNIPROT

c.185C>Tp.Thr62Ilemissense variantMODERATEcontig931118179

IGV:Start|Jump

G/A

NGS:0.039

C90:0.000

0.039
OAC-1

UNIPROT

c.175G>Ap.Val59Ilemissense variantMODERATEcontig931118189

IGV:Start|Jump

C/T

NGS:0.026

C90:0.000

0.026
FAD2-2

UNIPROT

c.164A>Gp.His55Argmissense variantMODERATEcontig831803205

IGV:Start|Jump

T/C

NGS:0.037

C90:0.000

0.037
FAD2-2

UNIPROT

c.161T>Ap.Leu54Hismissense variantMODERATEcontig831803208

IGV:Start|Jump

A/T

NGS:0.156

C90:0.000

0.156
FAD2-2

UNIPROT

c.64G>Tp.Ala22Sermissense variantMODERATEcontig831803305

IGV:Start|Jump

C/A

NGS:0.048

C90:0.000

0.048
ELF3

UNIPROT

c.358G>Ap.Gly120Argmissense variantMODERATEcontig97242064

IGV:Start|Jump

G/A

NGS:0.099

C90:0.493

0.099
ELF3

UNIPROT

c.520A>Cp.Asn174Hismissense variantMODERATEcontig97242226

IGV:Start|Jump

A/C

NGS:0.094

C90:0.502

0.094
ELF3

UNIPROT

c.772A>Gp.Ser258Glymissense variantMODERATEcontig97242478

IGV:Start|Jump

A/G

NGS:0.112

C90:0.000

0.112
ELF3

UNIPROT

c.812G>Cp.Gly271Alamissense variantMODERATEcontig97242518

IGV:Start|Jump

G/C

NGS:0.114

C90:0.938

0.114
ELF3

UNIPROT

c.1230-2_1230-1delAGsplice acceptor variant&intron variantHIGHcontig97243676

IGV:Start|Jump

TAG/T

NGS:0.088

C90:0.450

0.088
ELF3

UNIPROT

c.1466G>Ap.Ser489Asnmissense variantMODERATEcontig97244297

IGV:Start|Jump

G/A

NGS:0.123

C90:0.000

0.123
ELF3

UNIPROT

c.1630A>Gp.Thr544Alamissense variantMODERATEcontig97244461

IGV:Start|Jump

A/G

NGS:0.103

C90:0.545

0.103
ELF3

UNIPROT

c.1803_1805delTCAp.His601deldisruptive inframe deletionMODERATEcontig97244625

IGV:Start|Jump

ACAT/A

NGS:0.092

C90:0.000

0.092
ELF3

UNIPROT

c.1966C>Gp.Pro656Alamissense variantMODERATEcontig97244797

IGV:Start|Jump

C/G

NGS:0.123

C90:0.632

0.123
ELF3

UNIPROT

c.2141C>Gp.Pro714Argmissense variantMODERATEcontig97244972

IGV:Start|Jump

C/G

NGS:0.088

C90:0.335

0.088
ELF3

UNIPROT

c.2198G>Tp.Arg733Leumissense variantMODERATEcontig97245029

IGV:Start|Jump

G/T

NGS:0.125

C90:0.531

0.125
aPT4

UNIPROT

c.97T>Cp.Tyr33Hismissense variantMODERATEcontig1212828753

IGV:Start|Jump

T/C

NGS:0.439

C90:0.000

0.439
aPT4

UNIPROT

c.153A>Cp.Lys51Asnmissense variantMODERATEcontig1212828809

IGV:Start|Jump

A/C

NGS:0.375

C90:0.000

0.375
aPT4

UNIPROT

c.775delTp.Tyr259fsframeshift variantHIGHcontig1212831380

IGV:Start|Jump

AT/A

NGS:0.224

C90:0.000

0.224
aPT4

UNIPROT

c.1168T>Cp.Tyr390Hismissense variantMODERATEcontig1212833503

IGV:Start|Jump

T/C

NGS:0.546

C90:0.000

0.546
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
aPT1

UNIPROT

c.629C>Tp.Thr210Ilemissense variantMODERATEcontig1212840237

IGV:Start|Jump

C/T

NGS:0.561

C90:0.598

0.561
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
HDS-2

UNIPROT

c.127T>Gp.Ser43Alamissense variantMODERATEcontig951989794

IGV:Start|Jump

T/G

NGS:0.721

C90:0.000

0.721
AAE1-2

UNIPROT

c.331A>Gp.Asn111Aspmissense variantMODERATEcontig81209293

IGV:Start|Jump

A/G

NGS:0.123

C90:0.000

0.123
AAE1-2

UNIPROT

c.948_949insAp.Asp317fsframeshift variantHIGHcontig81209910

IGV:Start|Jump

C/CA

NGS:0.050

C90:0.000

0.05
AAE1-2

UNIPROT

c.952delCp.Gln318fsframeshift variantHIGHcontig81209912

IGV:Start|Jump

AC/A

NGS:0.050

C90:0.000

0.05
AAE1-2

UNIPROT

c.953A>Gp.Gln318Argmissense variantMODERATEcontig81209915

IGV:Start|Jump

A/G

NGS:0.050

C90:0.000

0.05
AAE1-2

UNIPROT

c.955C>Tp.Arg319Cysmissense variantMODERATEcontig81209917

IGV:Start|Jump

C/T

NGS:0.050

C90:0.000

0.05
AAE1-2

UNIPROT

c.1006A>Gp.Lys336Glumissense variantMODERATEcontig81209968

IGV:Start|Jump

A/G

NGS:0.116

C90:0.000

0.116
TFL1

UNIPROT

c.302-1G>Asplice acceptor variant&intron variantHIGHcontig1636520616

IGV:Start|Jump

C/T

NGS:0.103

C90:0.794

0.103
TFL1

UNIPROT

c.47_48dupATp.Val17fsframeshift variantHIGHcontig1636521258

IGV:Start|Jump

C/CAT

NGS:0.026

C90:0.211

0.026
HDS-1

UNIPROT

c.1378G>Ap.Val460Ilemissense variantMODERATEcontig1891886370

IGV:Start|Jump

C/T

NGS:0.167

C90:0.000

0.167
HDS-1

UNIPROT

c.136G>Ap.Val46Ilemissense variantMODERATEcontig1891889256

IGV:Start|Jump

C/T

NGS:0.088

C90:0.593

0.088
HDS-1

UNIPROT

c.56C>Gp.Ala19Glymissense variantMODERATEcontig1891889336

IGV:Start|Jump

G/C

NGS:0.125

C90:0.943

0.125
HDS-1

UNIPROT

c.35G>Ap.Cys12Tyrmissense variantMODERATEcontig1891889357

IGV:Start|Jump

C/T

NGS:0.094

C90:0.646

0.094
HDS-1

UNIPROT

c.-108+1_-108+2insGsplice donor variant&intron variantHIGHcontig1891889975

IGV:Start|Jump

A/AC

NGS:0.217

C90:0.000

0.217
FT

UNIPROT

c.41_43dupATAp.Asn14dupdisruptive inframe insertionMODERATEcontig15613124441

IGV:Start|Jump

T/TTAA

NGS:0.020

C90:0.000

0.02
FT

UNIPROT

c.32_43dupATAATAATAATAp.Asn11_Asn14dupdisruptive inframe insertionMODERATEcontig15613124441

IGV:Start|Jump

T/TTAATAATAATAA

NGS:0.066

C90:0.000

0.066
AAE1-3

UNIPROT

c.667G>Ap.Val223Ilemissense variantMODERATEcontig9761083187

IGV:Start|Jump

C/T

NGS:0.048

C90:0.000

0.048
AAE1-3

UNIPROT

c.634G>Cp.Gly212Argmissense variantMODERATEcontig9761083220

IGV:Start|Jump

C/G

NGS:0.116

C90:0.000

0.116
AAE1-3

UNIPROT

c.475G>Ap.Gly159Argmissense variantMODERATEcontig9761083550

IGV:Start|Jump

C/T

NGS:0.048

C90:0.000

0.048
AAE1-3

UNIPROT

c.416T>Cp.Leu139Promissense variantMODERATEcontig9761083609

IGV:Start|Jump

A/G

NGS:0.061

C90:0.000

0.061
AAE1-3

UNIPROT

c.382T>Cp.Tyr128Hismissense variantMODERATEcontig9761083643

IGV:Start|Jump

A/G

NGS:0.072

C90:0.000

0.072
AAE1-3

UNIPROT

c.296C>Tp.Pro99Leumissense variantMODERATEcontig9761083729

IGV:Start|Jump

G/A

NGS:0.046

C90:0.000

0.046
AAE1-3

UNIPROT

c.293A>Gp.Asp98Glymissense variantMODERATEcontig9761083732

IGV:Start|Jump

T/C

NGS:0.068

C90:0.000

0.068
AAE1-3

UNIPROT

c.284A>Tp.Glu95Valmissense variantMODERATEcontig9761083741

IGV:Start|Jump

T/A

NGS:0.053

C90:0.000

0.053
AAE1-3

UNIPROT

c.181G>Ap.Val61Ilemissense variantMODERATEcontig9761083894

IGV:Start|Jump

C/T

NGS:0.055

C90:0.000

0.055
AAE1-3

UNIPROT

c.167A>Gp.Glu56Glymissense variantMODERATEcontig9761083908

IGV:Start|Jump

T/C

NGS:0.070

C90:0.000

0.07
AAE1-3

UNIPROT

c.125A>Gp.Glu42Glymissense variantMODERATEcontig9761083950

IGV:Start|Jump

T/C

NGS:0.064

C90:0.000

0.064
AAE1-3

UNIPROT

c.79A>Gp.Thr27Alamissense variantMODERATEcontig9761083996

IGV:Start|Jump

T/C

NGS:0.068

C90:0.000

0.068
AAE1-3

UNIPROT

c.52G>Ap.Gly18Sermissense variantMODERATEcontig9761084023

IGV:Start|Jump

C/T

NGS:0.064

C90:0.000

0.064
AAE1-3

UNIPROT

c.3G>Ap.Met1?start lostHIGHcontig9761084072

IGV:Start|Jump

C/T

NGS:0.046

C90:0.416

0.046
GGR

UNIPROT

c.317C>Tp.Pro106Leumissense variantMODERATEcontig2282549309

IGV:Start|Jump

C/T

NGS:0.035

C90:0.220

0.035
GGR

UNIPROT

c.456T>Ap.His152Glnmissense variantMODERATEcontig2282549448

IGV:Start|Jump

T/A

NGS:0.068

C90:0.000

0.068
GGR

UNIPROT

c.460G>Ap.Asp154Asnmissense variantMODERATEcontig2282549452

IGV:Start|Jump

G/A

NGS:0.070

C90:0.000

0.07
GGR

UNIPROT

c.704A>Tp.His235Leumissense variantMODERATEcontig2282549696

IGV:Start|Jump

A/T

NGS:0.121

C90:0.000

0.121
GGR

UNIPROT

c.810A>Tp.Glu270Aspmissense variantMODERATEcontig2282549802

IGV:Start|Jump

A/T

NGS:0.024

C90:0.000

0.024
PKSB-3

UNIPROT

c.1652A>Gp.Glu551Glymissense variantMODERATEcontig933339759

IGV:Start|Jump

A/G

NGS:0.088

C90:0.000

0.088
PKSB-3

UNIPROT

c.1901C>Gp.Ala634Glymissense variantMODERATEcontig933340008

IGV:Start|Jump

C/G

NGS:0.059

C90:0.000

0.059


NEAREST GENETIC RELATIVES TO JL 4th Gen 2:
# Relative Genetic Distance
1 RSP11198-JL 4th Gen 4 2.03
2 RSP11199-JL 4th Gen 5 2.05
3 RSP11193-JL 4th Gen 1 3.57
4 RSP11195-JL 4th Gen 3 3.73
5 RSP11200-JL 4th Gen 6 4.34
6 RSP11075-JL yellow 4.55
7 RSP11214-JL 3rd Gen Mother 4.63
8 RSP11153-JL 4th Gen 7 5.15
9 RSP11197-JL 3rd Gen Mother 5.27
10 RSP11196-JL 3rd Gen Father 5.28
11 RSP11127-Jamaican Lions Ancestor 5.4
12 RSP11342-Blue Dream 8.03
13 RSP11002-CST 8.03
14 RSP11032-Blue Dream 8.29
15 RSP11201-BlueBerry Cheesecake x JL Male 8.41
16 RSP11033-Blue Dream 8.46
17 RSP11041-Gold Cracker 8.48
18 RSP11005-Blue Dream 8.5
19 RSP11034-Italian Kiss 8.51
20 RSP10990-Italian Kiss 8.53
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11075-JL yellow 4.59
2 RSP11002-CST 8.04
3 RSP11115-RKM-2018-023 8.13
4 RSP11033-Blue Dream 8.15
5 RSP11048-Gold Cracker 8.47
6 RSP10680-Blueberry Cheesecake 8.6
7 RSP11034-Italian Kiss 8.63
8 RSP11119-RKM-2018-027 8.64
9 RSP11038-Skunk 18 9.12
10 RSP10105-QUEEN JESUS 9.16
11 RSP11123-RKM-2018-031 9.24
12 RSP11035-Black Beauty 9.27
13 RSP10991-Golden Goat 2 9.28
14 RSP11014-Durban Poison 9.3
15 RSP11050-Hermaphrodite ResearchSample2 9.32
16 RSP11134-Cbot-2019-006 9.39
17 RSP11000-Liberty Haze 9.5
18 RSP10997-Kimbo Slice 9.57
19 RSP11094-RKM-2018-003 9.67
20 RSP10672-Blueberry Cheesecake 9.7
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR8346590 98 59
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495280 9 9

Blockchain Registration Information:

Transaction ID: c87aa20af866c71253cc6a6a72e1c3bc4ed3f41ee16a71d3ba91f3ba395c976b
Stamping Certificate: PDF
SHASUM Hash: 46eb5cafd6be778b9cd91f3bc89490fb033dd4c09682439b4ef3d37ae68ec7cb