80E

RSP11211
StrainSEEK Cannabis Certification Report

Accession Date:

June 27, 2019

General Information

Strain: 80E
Sample: 8.00E+00
RSP ID: RSP11211
Grower: Colorado Seed Inc./Mark Jordan
Accession Date: June 27, 2019
Gender: -
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 1.77
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I

Bt/Bd ALLELE COVERAGE

What does this visualization mean?


VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSA-3b

UNIPROT

c.298G>Ap.Ala100Thrmissense variantMODERATEcontig7052271640

IGV:Start|Jump

C/T

NGS:0.044

C90:0.177

0.044
GPPs1

UNIPROT

c.845_848delAAAGp.Glu282fsframeshift variantHIGHcontig676169629

IGV:Start|Jump

TGAAA/T

NGS:0.118

C90:0.000

0.118
GPPs1

UNIPROT

c.896A>Gp.Asn299Sermissense variantMODERATEcontig676169772

IGV:Start|Jump

A/G

NGS:0.046

C90:0.000

0.046
EMF1-2

UNIPROT

c.710A>Cp.His237Promissense variantMODERATEcontig885810

IGV:Start|Jump

A/C

NGS:0.090

C90:0.474

0.09
PHL-2

UNIPROT

c.1057A>Gp.Arg353Glymissense variantMODERATEcontig2621340335

IGV:Start|Jump

A/G

NGS:0.096

C90:0.555

0.096
PHL-2

UNIPROT

c.1346T>Cp.Leu449Promissense variantMODERATEcontig2621340624

IGV:Start|Jump

T/C

NGS:0.007

C90:0.000

0.007
PHL-2

UNIPROT

c.1469T>Gp.Phe490Cysmissense variantMODERATEcontig2621340747

IGV:Start|Jump

T/G

NGS:0.007

C90:0.000

0.007
PHL-2

UNIPROT

c.2578T>Ap.Leu860Ilemissense variantMODERATEcontig2621342621

IGV:Start|Jump

T/A

NGS:0.068

C90:0.746

0.068
PHL-2

UNIPROT

c.2756A>Cp.Glu919Alamissense variantMODERATEcontig2621342799

IGV:Start|Jump

A/C

NGS:0.064

C90:0.675

0.064
PHL-2

UNIPROT

c.2783G>Ap.Ser928Asnmissense variantMODERATEcontig2621342826

IGV:Start|Jump

G/A

NGS:0.107

C90:0.890

0.107
PHL-2

UNIPROT

c.2830A>Gp.Asn944Aspmissense variantMODERATEcontig2621342873

IGV:Start|Jump

A/G

NGS:0.018

C90:0.000

0.018
PHL-2

UNIPROT

c.2903_2905dupGCAp.Ser968dupdisruptive inframe insertionMODERATEcontig2621342939

IGV:Start|Jump

T/TGCA

NGS:0.018

C90:0.522

0.018
PHL-2

UNIPROT

c.3002A>Gp.Tyr1001Cysmissense variantMODERATEcontig2621343045

IGV:Start|Jump

A/G

NGS:0.055

C90:0.316

0.055
PHL-2

UNIPROT

c.3027G>Tp.Lys1009Asnmissense variantMODERATEcontig2621343070

IGV:Start|Jump

G/T

NGS:0.055

C90:0.311

0.055
PHL-2

UNIPROT

c.3033T>Gp.Cys1011Trpmissense variantMODERATEcontig2621343076

IGV:Start|Jump

T/G

NGS:0.055

C90:0.292

0.055
PHL-2

UNIPROT

c.3165T>Ap.Phe1055Leumissense variantMODERATEcontig2621343208

IGV:Start|Jump

T/A

NGS:0.002

C90:0.000

0.002
PHL-2

UNIPROT

c.3209A>Gp.Gln1070Argmissense variantMODERATEcontig2621343252

IGV:Start|Jump

A/G

NGS:0.103

C90:0.885

0.103
PHL-2

UNIPROT

c.3467A>Gp.Gln1156Argmissense variantMODERATEcontig2621343510

IGV:Start|Jump

A/G

NGS:0.064

C90:0.713

0.064
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.948T>Gp.Asp316Glumissense variantMODERATEcontig7001950690

IGV:Start|Jump

A/C

NGS:0.456

C90:0.000

0.456
PKSG-2b

UNIPROT

c.945T>Gp.Ser315Argmissense variantMODERATEcontig7001950693

IGV:Start|Jump

A/C

NGS:0.454

C90:0.000

0.454
PKSG-2b

UNIPROT

c.944G>Ap.Ser315Asnmissense variantMODERATEcontig7001950694

IGV:Start|Jump

C/T

NGS:0.445

C90:0.000

0.445
PKSG-2b

UNIPROT

c.934C>Gp.His312Aspmissense variantMODERATEcontig7001950704

IGV:Start|Jump

G/C

NGS:0.410

C90:0.000

0.41
PKSG-2b

UNIPROT

c.774G>Ap.Met258Ilemissense variantMODERATEcontig7001950864

IGV:Start|Jump

C/T

NGS:0.366

C90:0.947

0.366
PKSG-2b

UNIPROT

c.718T>Ap.Phe240Ilemissense variantMODERATEcontig7001950920

IGV:Start|Jump

A/T

NGS:0.114

C90:0.000

0.114
PKSG-2b

UNIPROT

c.241G>Ap.Val81Metmissense variantMODERATEcontig7001951397

IGV:Start|Jump

C/T

NGS:0.154

C90:0.000

0.154
PKSG-2b

UNIPROT

c.240T>Gp.Asp80Glumissense variantMODERATEcontig7001951398

IGV:Start|Jump

A/C

NGS:0.156

C90:0.000

0.156
PKSG-2b

UNIPROT

c.224A>Gp.Lys75Argmissense variantMODERATEcontig7001951414

IGV:Start|Jump

T/C

NGS:0.151

C90:0.957

0.151
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-2b

UNIPROT

c.-2_1dupATAstart lost&conservative inframe insertionHIGHcontig7001951880

IGV:Start|Jump

A/ATAT

NGS:0.410

C90:0.000

0.41
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
PKSG-4b

UNIPROT

c.419A>Gp.Asp140Glymissense variantMODERATEcontig7002721254

IGV:Start|Jump

T/C

NGS:0.430

C90:0.440

0.43
PKSG-4b

UNIPROT

c.352_355delACAGp.Thr118fsframeshift variantHIGHcontig7002721317

IGV:Start|Jump

CCTGT/C

NGS:0.529

C90:0.000

0.529
PKSG-4b

UNIPROT

c.323A>Gp.Glu108Glymissense variantMODERATEcontig7002721350

IGV:Start|Jump

T/C

NGS:0.469

C90:0.000

0.469
DXR-2

UNIPROT

c.1319T>Cp.Ile440Thrmissense variantMODERATEcontig380285250

IGV:Start|Jump

A/G

NGS:0.480

C90:0.000

0.48
OAC-2

UNIPROT

c.260C>Gp.Ser87Cysmissense variantMODERATEcontig931109979

IGV:Start|Jump

G/C

NGS:0.070

C90:0.000

0.07
ELF3

UNIPROT

c.358G>Ap.Gly120Argmissense variantMODERATEcontig97242064

IGV:Start|Jump

G/A

NGS:0.099

C90:0.493

0.099
ELF3

UNIPROT

c.520A>Cp.Asn174Hismissense variantMODERATEcontig97242226

IGV:Start|Jump

A/C

NGS:0.094

C90:0.502

0.094
ELF3

UNIPROT

c.574A>Gp.Asn192Aspmissense variantMODERATEcontig97242280

IGV:Start|Jump

A/G

NGS:0.042

C90:0.579

0.042
ELF3

UNIPROT

c.757C>Tp.Pro253Sermissense variantMODERATEcontig97242463

IGV:Start|Jump

C/T

NGS:0.020

C90:0.048

0.02
ELF3

UNIPROT

c.772A>Gp.Ser258Glymissense variantMODERATEcontig97242478

IGV:Start|Jump

A/G

NGS:0.112

C90:0.000

0.112
ELF3

UNIPROT

c.812G>Cp.Gly271Alamissense variantMODERATEcontig97242518

IGV:Start|Jump

G/C

NGS:0.114

C90:0.938

0.114
ELF3

UNIPROT

c.1120A>Gp.Met374Valmissense variant&splice region variantMODERATEcontig97243091

IGV:Start|Jump

A/G

NGS:0.004

C90:0.000

0.004
ELF3

UNIPROT

c.1366T>Gp.Leu456Valmissense variantMODERATEcontig97244197

IGV:Start|Jump

T/G

NGS:0.015

C90:0.000

0.015
ELF3

UNIPROT

c.1466G>Ap.Ser489Asnmissense variantMODERATEcontig97244297

IGV:Start|Jump

G/A

NGS:0.123

C90:0.000

0.123
ELF3

UNIPROT

c.1630A>Gp.Thr544Alamissense variantMODERATEcontig97244461

IGV:Start|Jump

A/G

NGS:0.103

C90:0.545

0.103
ELF3

UNIPROT

c.1803_1805delTCAp.His601deldisruptive inframe deletionMODERATEcontig97244625

IGV:Start|Jump

ACAT/A

NGS:0.092

C90:0.000

0.092
ELF3

UNIPROT

c.1966C>Gp.Pro656Alamissense variantMODERATEcontig97244797

IGV:Start|Jump

C/G

NGS:0.123

C90:0.632

0.123
ELF3

UNIPROT

c.2140C>Tp.Pro714Sermissense variantMODERATEcontig97244971

IGV:Start|Jump

C/T

NGS:0.018

C90:0.038

0.018
ELF3

UNIPROT

c.2141C>Gp.Pro714Argmissense variantMODERATEcontig97244972

IGV:Start|Jump

C/G

NGS:0.088

C90:0.335

0.088
ELF3

UNIPROT

c.2198G>Tp.Arg733Leumissense variantMODERATEcontig97245029

IGV:Start|Jump

G/T

NGS:0.125

C90:0.531

0.125
ELF3

UNIPROT

c.2216A>Gp.His739Argmissense variantMODERATEcontig97245047

IGV:Start|Jump

A/G

NGS:0.020

C90:0.182

0.02
ELF5

UNIPROT

c.237_238insTTTGp.Asn80fsframeshift variantHIGHcontig382879296

IGV:Start|Jump

A/ATTTG

NGS:0.002

C90:0.000

0.002
ELF5

UNIPROT

c.853C>Tp.Pro285Sermissense variantMODERATEcontig382880715

IGV:Start|Jump

C/T

NGS:0.007

C90:0.153

0.007
ELF5

UNIPROT

c.1162A>Gp.Thr388Alamissense variantMODERATEcontig382881132

IGV:Start|Jump

A/G

NGS:0.011

C90:0.033

0.011
aPT4

UNIPROT

c.235_236delGTp.Val79fsframeshift variantHIGHcontig1212829030

IGV:Start|Jump

ATG/A

NGS:0.417

C90:0.000

0.417
aPT4

UNIPROT

c.238delTp.Ser80fsframeshift variantHIGHcontig1212829034

IGV:Start|Jump

AT/A

NGS:0.421

C90:0.000

0.421
aPT4

UNIPROT

c.439T>Ap.Ser147Thrmissense variantMODERATEcontig1212830634

IGV:Start|Jump

T/A

NGS:0.015

C90:0.000

0.015
aPT4

UNIPROT

c.450G>Ap.Met150Ilemissense variantMODERATEcontig1212830645

IGV:Start|Jump

G/A

NGS:0.007

C90:0.000

0.007
aPT4

UNIPROT

c.1168T>Cp.Tyr390Hismissense variantMODERATEcontig1212833503

IGV:Start|Jump

T/C

NGS:0.546

C90:0.000

0.546
aPT1

UNIPROT

c.220A>Gp.Ile74Valmissense variantMODERATEcontig1212835927

IGV:Start|Jump

A/G

NGS:0.018

C90:0.019

0.018
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
HDS-2

UNIPROT

c.127T>Gp.Ser43Alamissense variantMODERATEcontig951989794

IGV:Start|Jump

T/G

NGS:0.721

C90:0.000

0.721
AAE1-2

UNIPROT

c.331A>Gp.Asn111Aspmissense variantMODERATEcontig81209293

IGV:Start|Jump

A/G

NGS:0.123

C90:0.000

0.123
AAE1-2

UNIPROT

c.374A>Gp.His125Argmissense variantMODERATEcontig81209336

IGV:Start|Jump

A/G

NGS:0.026

C90:0.000

0.026
AAE1-2

UNIPROT

c.1006A>Gp.Lys336Glumissense variantMODERATEcontig81209968

IGV:Start|Jump

A/G

NGS:0.116

C90:0.000

0.116
AAE1-2

UNIPROT

c.1205C>Tp.Ala402Valmissense variantMODERATEcontig81210167

IGV:Start|Jump

C/T

NGS:0.009

C90:0.000

0.009
PHL-1

UNIPROT

c.2651C>Tp.Ala884Valmissense variantMODERATEcontig14391487146

IGV:Start|Jump

G/A

NGS:0.044

C90:0.622

0.044
PHL-1

UNIPROT

c.2623A>Gp.Thr875Alamissense variantMODERATEcontig14391487174

IGV:Start|Jump

T/C

NGS:0.123

C90:0.000

0.123
PHL-1

UNIPROT

c.2561A>Tp.Asn854Ilemissense variantMODERATEcontig14391487236

IGV:Start|Jump

T/A

NGS:0.046

C90:0.612

0.046
PHL-1

UNIPROT

c.2551A>Gp.Thr851Alamissense variantMODERATEcontig14391487246

IGV:Start|Jump

T/C

NGS:0.116

C90:0.890

0.116
PHL-1

UNIPROT

c.1387A>Gp.Thr463Alamissense variantMODERATEcontig14391489811

IGV:Start|Jump

T/C

NGS:0.107

C90:0.904

0.107
TFL1

UNIPROT

c.302-1G>Asplice acceptor variant&intron variantHIGHcontig1636520616

IGV:Start|Jump

C/T

NGS:0.103

C90: