UP The Straits

RSP11260
StrainSEEK Cannabis Certification Report

Accession Date:

July 29, 2021

General Information

Strain: UP The Straits
Sample: UP the Straits
RSP ID: RSP11260
Grower: UP Farms
Accession Date: July 29, 2021
Gender: Female
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*



Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 1.23
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCASc.1229G>Ap.Gly410Glumissense variantMODERATEcontig7414416599

IGV:Start|Jump

C/T

NGS:0.039

C90:0.000

0.039
THCASc.373G>Cp.Val125Leumissense variantMODERATEcontig7414417455

IGV:Start|Jump

C/G

NGS:0.050

C90:0.000

0.05
THCASc.187A>Cp.Ile63Leumissense variantMODERATEcontig7414417641

IGV:Start|Jump

T/G

NGS:0.059

C90:0.679

0.059



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
PKSG-4b

UNIPROT

c.419A>Gp.Asp140Glymissense variantMODERATEcontig7002721254

IGV:Start|Jump

T/C

NGS:0.430

C90:0.440

0.43
aPT4

UNIPROT

c.1168T>Cp.Tyr390Hismissense variantMODERATEcontig1212833503

IGV:Start|Jump

T/C

NGS:0.546

C90:0.000

0.546
aPT1

UNIPROT

c.629C>Tp.Thr210Ilemissense variantMODERATEcontig1212840237

IGV:Start|Jump

C/T

NGS:0.561

C90:0.598

0.561
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
HDS-2

UNIPROT

c.127T>Gp.Ser43Alamissense variantMODERATEcontig951989794

IGV:Start|Jump

T/G

NGS:0.721

C90:0.000

0.721


NEAREST GENETIC RELATIVES TO UP The Straits:
# Relative Genetic Distance
1 RSP11017-Blue Dream 5.02
2 RSP10989-UP Sunrise 5.04
3 RSP10763-Serious Happiness 5.57
4 RSP11007-Blue Dream 5.83
5 RSP11010-Blue Dream 5.93
6 RSP11011-Super Blue Dream 5.93
7 RSP11004-Blue Dream 5.96
8 RSP11256-UP Sunset 6.05
9 RSP11006-Blue Dream 6.12
10 RSP10460-Cheese 6.15
11 RSP11008-Blue Dream 6.19
12 RSP11009-Blue Dream 6.21
13 RSP11243-Doug's Varin 6.35
14 RSP11003-Snoops Dream 6.36
15 RSP11005-Blue Dream 6.44
16 RSP11031-Snoops Dream 6.48
17 RSP11094-RKM-2018-003 6.49
18 RSP11012-Blue Dream 6.49
19 RSP11259-UP Green Flash 6.59
20 RSP10990-Italian Kiss 6.67
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP10989-UP Sunrise 5.33
2 RSP11094-RKM-2018-003 6.49
3 RSP11034-Italian Kiss 6.99
4 RSP11033-Blue Dream 7.25
5 RSP11120-RKM-2018-028 7.72
6 RSP11097-RKM-2018-006 7.92
7 RSP11112-RKM-2018-020 7.93
8 RSP11119-RKM-2018-027 7.95
9 RSP11115-RKM-2018-023 7.97
10 RSP11110-RKM-2018-018 8.05
11 RSP11049-Hermaphrodite Research Sample1 8.09
12 RSP11014-Durban Poison 8.1
13 RSP10684-Blueberry Cheesecake 8.15
14 RSP10991-Golden Goat 2 8.4
15 RSP10105-QUEEN JESUS 8.41
16 RSP11100-RKM-2018-009 8.8
17 RSP11129-Cbot-2019-001 8.85
18 RSP11048-Gold Cracker 8.92
19 RSP11002-CST 8.97
20 RSP11000-Liberty Haze 8.99
MOST GENETICALLY DISTANT STRAINS FROM UP The Straits:
# Strain Genetic Distance
1 RSP11329-Cherry Blossom 13.27
2 RSP11213-80E 13.23
3 RSP11211-80E 13.05
4 RSP11205-Feral 12.99
5 RSP11212-80E 12.84
6 RSP11317-Cherry Blossom 12.72
7 RSP11190-Red Eye OG 12.7
8 RSP11207-Carmaleonte 12.62
9 RSP11333-Cherry Blossom 12.6
10 RSP11306-Cherry Blossom 12.42
11 RSP11324-Cherry Blossom 12.39
12 RSP11303-Cherry Blossom CBG 12.34
13 RSP11206-Feral 12.31
14 RSP11326-Cherry Blossom 12.27
15 RSP11314-Cherry Blossom 12.18
16 RSP10890-Feral 12.17
17 RSP11202-Carmagnola 11.93
18 RSP11128-Kush Hemp E1 11.84
19 RSP10892-Feral 11.83
20 RSP11208-CS 11.81
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR8349283 72 44

Blockchain Registration Information:

Transaction ID: 4581f60deeb160f8b372ca1bc53308b505f74631cdf55094e85fa2f24112a0c3
Stamping Certificate: PDF
SHASUM Hash: 37ae2635db451e066bce54f8b7f58ccebd36b01a798a63c84d34cc247b102a9b