Unknown-(Cherry Wine)-(003)

RSP11270
StrainSEEK Cannabis Certification Report

Accession Date:

September 27, 2019

General Information

Strain: Unknown-(Cherry Wine)-(003)
Sample: Odyssey-003
RSP ID: RSP11270
Grower: Keaton Baker
Accession Date: September 27, 2019
Gender: Female
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 1.43
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type III

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
GPPs1

UNIPROT

c.845_848delAAAGp.Glu282fsframeshift variantHIGHcontig676169629

IGV:Start|Jump

TGAAA/T

NGS:0.118

C90:0.000

0.118
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.774G>Ap.Met258Ilemissense variantMODERATEcontig7001950864

IGV:Start|Jump

C/T

NGS:0.366

C90:0.947

0.366
PKSG-2b

UNIPROT

c.241G>Ap.Val81Metmissense variantMODERATEcontig7001951397

IGV:Start|Jump

C/T

NGS:0.154

C90:0.000

0.154
PKSG-2b

UNIPROT

c.240T>Gp.Asp80Glumissense variantMODERATEcontig7001951398

IGV:Start|Jump

A/C

NGS:0.156

C90:0.000

0.156
PKSG-2b

UNIPROT

c.230T>Cp.Val77Alamissense variantMODERATEcontig7001951408

IGV:Start|Jump

A/G

NGS:0.134

C90:0.646

0.134
PKSG-2b

UNIPROT

c.224A>Gp.Lys75Argmissense variantMODERATEcontig7001951414

IGV:Start|Jump

T/C

NGS:0.151

C90:0.957

0.151
PKSG-2b

UNIPROT

c.188T>Gp.Ile63Sermissense variantMODERATEcontig7001951450

IGV:Start|Jump

A/C

NGS:0.118

C90:0.000

0.118
PKSG-2b

UNIPROT

c.187A>Tp.Ile63Phemissense variantMODERATEcontig7001951451

IGV:Start|Jump

T/A

NGS:0.116

C90:0.000

0.116
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-4b

UNIPROT

c.496A>Gp.Lys166Glumissense variantMODERATEcontig7002721177

IGV:Start|Jump

T/C

NGS:0.651

C90:0.684

0.651
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.485A>Gp.Lys162Argmissense variantMODERATEcontig7002721188

IGV:Start|Jump

T/C

NGS:0.643

C90:0.301

0.643
PKSG-4b

UNIPROT

c.431T>Gp.Val144Glymissense variantMODERATEcontig7002721242

IGV:Start|Jump

A/C

NGS:0.575

C90:0.679

0.575
PKSG-4b

UNIPROT

c.419A>Gp.Asp140Glymissense variantMODERATEcontig7002721254

IGV:Start|Jump

T/C

NGS:0.430

C90:0.440

0.43
PKSG-4b

UNIPROT

c.352_355delACAGp.Thr118fsframeshift variantHIGHcontig7002721317

IGV:Start|Jump

CCTGT/C

NGS:0.529

C90:0.000

0.529
PKSG-4b

UNIPROT

c.323A>Gp.Glu108Glymissense variantMODERATEcontig7002721350

IGV:Start|Jump

T/C

NGS:0.469

C90:0.000

0.469
DXR-2

UNIPROT

c.1319T>Cp.Ile440Thrmissense variantMODERATEcontig380285250

IGV:Start|Jump

A/G

NGS:0.480

C90:0.000

0.48
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
HDS-2

UNIPROT

c.127T>Gp.Ser43Alamissense variantMODERATEcontig951989794

IGV:Start|Jump

T/G

NGS:0.721

C90:0.000

0.721


NEAREST GENETIC RELATIVES TO Unknown-(Cherry Wine)-(003):
# Relative Genetic Distance
1 RSP11298-Cherry Blossom 3.26
2 RSP11269-Unknown- Cherry Wine - 002 3.35
3 RSP11309-Cherry Blossom 3.98
4 RSP11312-Cherry Blossom 4.35
5 RSP11320-Cherry Blossom 4.86
6 RSP11271-Unknown- Cherry Wine - 004 5.4
7 RSP11311-Cherry Blossom 5.68
8 RSP11332-Cherry Blossom 5.82
9 RSP11272-Unknown- Cherry Wine - 005 6.12
10 RSP11268-Unknown- Cherry Wine - 001 6.3
11 RSP11316-Cherry Blossom 6.48
12 RSP11310-Cherry Blossom 6.63
13 RSP11328-Cherry Blossom 6.72
14 RSP11300-Cherry Blossom 6.86
15 RSP11321-Cherry Blossom 6.92
16 RSP11304-Cherry Blossom 6.94
17 RSP11308-Cherry Blossom 7.01
18 RSP11335-Cherry Blossom 7.04
19 RSP11145-Cherry Wine 7.33
20 RSP11327-Cherry Blossom 7.42
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP11143-Cherry 9.44
2 RSP11014-Durban Poison 9.78
3 RSP11132-Cbot-2019-004 9.88
4 RSP10684-Blueberry Cheesecake 10.07
5 RSP10989-UP Sunrise 10.25
6 RSP11000-Liberty Haze 10.3
7 RSP11094-RKM-2018-003 10.49
8 RSP11142-Cherry 10.61
9 RSP10672-Blueberry Cheesecake 10.75
10 RSP11129-Cbot-2019-001 10.76
11 RSP10105-QUEEN JESUS 10.92
12 RSP10653-Jiangji 11.32
13 RSP11112-RKM-2018-020 11.39
14 RSP11002-CST 11.56
15 RSP10667-Tygra 11.58
16 RSP11133-Cbot-2019-005 11.64
17 RSP11096-RKM-2018-005 11.74
18 RSP11121-RKM-2018-029 11.84
19 RSP11115-RKM-2018-023 11.88
20 RSP10680-Blueberry Cheesecake 11.89
MOST GENETICALLY DISTANT STRAINS FROM Unknown-(Cherry Wine)-(003):
# Strain Genetic Distance
1 RSP11190-Red Eye OG 14.5
2 RSP11118-RKM-2018-026 14.23
3 RSP11104-RKM-2018-013 14.01
4 RSP11266-Abacus 13.98
5 RSP11353-Rugburn OG 13.95
6 RSP11185-Chem 91 13.9
7 RSP10837-Skywalker OG 13.6
8 RSP11072-SFVxTK 13.59
9 RSP11347-Jacks Cleaner 13.57
10 RSP11128-Kush Hemp E1 13.56
11 RSP11113-RKM-2018-021 13.56
12 RSP11124-RKM-2018-032 13.54
13 RSP11109-RKM-2018-017 13.48
14 RSP11241-501st OG 13.47
15 RSP11042-Hermaphrodite Research Sample1 13.45
16 RSP11099-RKM-2018-008 13.41
17 RSP11222-Glueberry OG 13.4
18 RSP11075-JL yellow 13.4
19 RSP11103-RKM-2018-012 13.4
20 RSP11341-Garlic 13.35
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR4448752 70 43
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495317 10 10

Blockchain Registration Information:

Transaction ID: e95fdf29ea8f509b4dacfb888428d30e9c350a89b67881c123e02b298cadb20a
Stamping Certificate: PDF
SHASUM Hash: 4eabb307b2b8b74bfbf328699a4c43635fe6188d637d207b14e72a42c1e80767