Garlic

RSP11341
StrainSEEK Cannabis Certification Report

Accession Date:

October 18, 2019

Summary

Garlic (RSP11341/Happy Valley) is a genetic Type I plant and its genetics appear uncommon. The sample's closest relative in the database is Skywalker OG (RSP10837/THC Design) and it is a potential sibling. The heterozygosity rate is 1.2% which is higher than average (68.5 percentile).

General Information

Strain: Garlic
RSP ID: RSP11341
Grower: Happy Valley
Accession Date: October 18, 2019
Gender: Female
Strain Seek Version: V2


What does this visualization mean?

Chemical Information*


Cannabinoid and Terpenoid information provided by our Partner Labs.

CANNABINOIDS

THC + THCA %: N/A
CBD + CBDA %: N/A
THCV + THCVA %: N/A
CBC + CBCA %: N/A
CBG + CBGA %: N/A
CBN + CBNA %: N/A

TERPENOIDS

  • α-Bisabolol %: N/A
    Borneol %: N/A
    Camphene %: N/A
    Carene %: N/A
    Caryophyllene oxide %: N/A
    β-Carophyllene %: N/A
    Fenchol %: N/A
    Geraniol %: N/A
    α-Humulene %: N/A
    Limonene %: N/A
    Linalool %: N/A
  • Myrcene %: N/A
    α-Phellandrene %: N/A
    Terpinolene %: N/A
    α-Terpineol %: N/A
    α-Terpinene %: N/A
    γ-Terpinene %: N/A
    Total Nerolidol %: N/A
    Total Ocimene %: N/A
    α-Pinene %: N/A
    β-Pinene %: N/A

Genetic Information

View this strain on the Phylotree
Percent Heterozygosity: 1.2
Download VCF file: Here
Download FastQ Files: Read 1 Read 2
Download BAM file: BAM index
Download Annotated Variants: ANNOTATED VCF index
Plant Type: Type I

Bt/Bd ALLELE COVERAGE

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CBCAS COVERAGE


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Y-RATIO DISTRIBUTION


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VARIANTS (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCASc.749C>Ap.Ala250Aspmissense variantMODERATEcontig7414417079

IGV:Start|Jump

G/T

NGS:0.127

C90:0.632

0.127



VARIANTS (SELECT GENES OF INTEREST)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
PKSG-4a

UNIPROT

c.617A>Gp.Tyr206Cysmissense variantMODERATEcontig7001938028

IGV:Start|Jump

A/G

NGS:0.075

C90:0.000

0.075
PKSG-4a

UNIPROT

c.626_628delATAp.Asn209deldisruptive inframe deletionMODERATEcontig7001938032

IGV:Start|Jump

CAAT/C

NGS:0.075

C90:0.000

0.075
PKSG-4a

UNIPROT

c.1191_1193delTTAp.Tyr398deldisruptive inframe deletionMODERATEcontig7001938600

IGV:Start|Jump

AATT/A

NGS:0.167

C90:0.000

0.167
PKSG-2a

UNIPROT

c.1136G>Ap.Arg379Hismissense variantMODERATEcontig7001944254

IGV:Start|Jump

C/T

NGS:0.020

C90:0.000

0.02
PKSG-2a

UNIPROT

c.948T>Gp.Asp316Glumissense variantMODERATEcontig7001944442

IGV:Start|Jump

A/C

NGS:0.079

C90:0.000

0.079
PKSG-2a

UNIPROT

c.945T>Gp.Ser315Argmissense variantMODERATEcontig7001944445

IGV:Start|Jump

A/C

NGS:0.079

C90:0.000

0.079
PKSG-2a

UNIPROT

c.944G>Ap.Ser315Asnmissense variantMODERATEcontig7001944446

IGV:Start|Jump

C/T

NGS:0.079

C90:0.000

0.079
PKSG-2a

UNIPROT

c.934C>Gp.His312Aspmissense variantMODERATEcontig7001944456

IGV:Start|Jump

G/C

NGS:0.070

C90:0.000

0.07
PKSG-2a

UNIPROT

c.67T>Ap.Phe23Ilemissense variantMODERATEcontig7001945567

IGV:Start|Jump

A/T

NGS:0.825

C90:0.904

0.825
PKSG-2a

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001945603

IGV:Start|Jump

T/A

NGS:0.763

C90:0.876

0.763
PKSG-2b

UNIPROT

c.1152T>Ap.Asn384Lysmissense variantMODERATEcontig7001950486

IGV:Start|Jump

A/T

NGS:0.715

C90:0.895

0.715
PKSG-2b

UNIPROT

c.1132C>Gp.Leu378Valmissense variantMODERATEcontig7001950506

IGV:Start|Jump

G/C

NGS:0.717

C90:0.000

0.717
PKSG-2b

UNIPROT

c.1124G>Cp.Arg375Thrmissense variantMODERATEcontig7001950514

IGV:Start|Jump

C/G

NGS:0.015

C90:0.000

0.015
PKSG-2b

UNIPROT

c.1117A>Gp.Ile373Valmissense variantMODERATEcontig7001950521

IGV:Start|Jump

T/C

NGS:0.807

C90:0.981

0.807
PKSG-2b

UNIPROT

c.995C>Tp.Ser332Phemissense variantMODERATEcontig7001950643

IGV:Start|Jump

G/A

NGS:0.042

C90:0.000

0.042
PKSG-2b

UNIPROT

c.67A>Tp.Ile23Phemissense variantMODERATEcontig7001951815

IGV:Start|Jump

T/A

NGS:0.033

C90:0.325

0.033
PKSG-2b

UNIPROT

c.31A>Tp.Thr11Sermissense variantMODERATEcontig7001951851

IGV:Start|Jump

T/A

NGS:0.844

C90:0.880

0.844
PKSG-4b

UNIPROT

c.535_545delATTGGAGTGGGp.Ile179fsframeshift variantHIGHcontig7002721127

IGV:Start|Jump

CCCCACTCCAAT/C

NGS:0.105

C90:0.000

0.105
PKSG-4b

UNIPROT

c.523C>Tp.His175Tyrmissense variantMODERATEcontig7002721150

IGV:Start|Jump

G/A

NGS:0.112

C90:0.325

0.112
PKSG-4b

UNIPROT

c.489delTp.Phe163fsframeshift variantHIGHcontig7002721183

IGV:Start|Jump

CA/C

NGS:0.792

C90:0.761

0.792
PKSG-4b

UNIPROT

c.353_354insCCp.Gly119fsframeshift variantHIGHcontig7002721319

IGV:Start|Jump

T/TGG

NGS:0.175

C90:0.000

0.175
DXR-2

UNIPROT

c.1319T>Cp.Ile440Thrmissense variantMODERATEcontig380285250

IGV:Start|Jump

A/G

NGS:0.480

C90:0.000

0.48
DXR-2

UNIPROT

c.431C>Gp.Ala144Glymissense variantMODERATEcontig380287760

IGV:Start|Jump

G/C

NGS:0.182

C90:0.550

0.182
aPT4

UNIPROT

c.35A>Cp.Gln12Promissense variantMODERATEcontig1212828691

IGV:Start|Jump

A/C

NGS:0.075

C90:0.000

0.075
aPT1

UNIPROT

c.406A>Gp.Ile136Valmissense variantMODERATEcontig1212839605

IGV:Start|Jump

A/G

NGS:0.579

C90:0.761

0.579
HDS-2

UNIPROT

c.82_93delGTAACCGGAACTp.Val28_Thr31delconservative inframe deletionMODERATEcontig951989748

IGV:Start|Jump

CGTAACCGGAACT/C

NGS:0.805

C90:0.000

0.805
HDS-2

UNIPROT

c.127T>Gp.Ser43Alamissense variantMODERATEcontig951989794

IGV:Start|Jump

T/G

NGS:0.721

C90:0.000

0.721


NEAREST GENETIC RELATIVES TO Garlic:
# Relative Genetic Distance
1 RSP10837-Skywalker OG 4.98
2 RSP11072-SFVxTK 5.15
3 RSP11104-RKM-2018-013 5.33
4 RSP11118-RKM-2018-026 5.35
5 RSP11362-NSPM1 5.38
6 RSP11190-Red Eye OG 5.59
7 RSP11353-Rugburn OG 5.73
8 RSP11352-Star Dawg 5.78
9 RSP11242-MENDO BREATH 5.84
10 RSP11050-Hermaphrodite ResearchSample2 5.89
11 RSP11231-Gorilla Cookies 5.93
12 RSP11073-Pie Hoe 6.08
13 RSP11266-Abacus 6.15
14 RSP11071-Sunday Driver 6.29
15 RSP11103-RKM-2018-012 6.41
16 RSP11126-RKM-2018-034 6.5
17 RSP11043-Hermaphrodite ResearchSample2 6.53
18 RSP11265-Pure Power Plant 6.66
19 RSP11241-501st OG 6.67
20 RSP10988-The Gift 6.72
NEAREST GENETIC RELATIVES TO BASE TREE:
# Relative Genetic Distance
1 RSP10837-Skywalker OG 4.92
2 RSP11118-RKM-2018-026 5.38
3 RSP11050-Hermaphrodite ResearchSample2 6.06
4 RSP11073-Pie Hoe 6.22
5 RSP11126-RKM-2018-034 6.38
6 RSP10988-The Gift 6.53
7 RSP10551-Sour Raspberry 6.9
8 RSP11096-RKM-2018-005 6.98
9 RSP11124-RKM-2018-032 7.2
10 RSP11093-RKM-2018-002 7.25
11 RSP11125-RKM-2018-033 7.27
12 RSP10680-Blueberry Cheesecake 7.42
13 RSP10684-Blueberry Cheesecake 7.47
14 RSP10997-Kimbo Slice 7.56
15 RSP11049-Hermaphrodite Research Sample1 7.76
16 RSP11100-RKM-2018-009 7.88
17 RSP11112-RKM-2018-020 8.02
18 RSP10755-Recon 8.03
19 RSP11121-RKM-2018-029 8.07
20 RSP11114-RKM-2018-022 8.14
NEAREST GENETIC RELATIVES IN PHYLOS DATASET:
Phylos Strain Number of Overlapping SNPs Concordance
SRR8347212 62 46
NEAREST GENETIC RELATIVES IN LYNCH DATASET:
Nearest Lynch Strain Number of Overlapping SNPs Concordance
SRR3495270 6 6

Blockchain Registration Information:

Transaction ID: 124e50e295e023cbffad793da7c2b0d7a2dc6d2376029a75631913ad8e5ec443
Stamping Certificate: PDF
SHASUM Hash: 75bbe91351a381becb259a78dfc6702d7d57c7cf15dd7354ae688e9ce120396d