Diana

RSP 10235

Grower: CSU

General Information

Sample Name
Diana-1
Accession Date
May 12, 2016
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type II

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.08%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0534
male female RSP10235

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.938_939insG p.Ser315fs frameshift variant high contig700 1950699

IGV: Start, Jump

T/TC
NGS:
0.002
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
aPT4

UniProt

c.470T>C p.Leu157Ser missense variant moderate contig121 2830665

IGV: Start, Jump

T/C
NGS:
0.007
C90:
0.000
aPT4

UniProt

c.517A>T p.Ile173Leu missense variant & splice region variant moderate contig121 2830795

IGV: Start, Jump

A/T
NGS:
0.022
C90:
0.000
aPT4

UniProt

c.634C>A p.Pro212Thr missense variant moderate contig121 2830912

IGV: Start, Jump

C/A
NGS:
0.009
C90:
0.000
aPT4

UniProt

c.757G>T p.Val253Leu missense variant moderate contig121 2831364

IGV: Start, Jump

G/T
NGS:
0.039
C90:
0.000
aPT4

UniProt

c.1156A>T p.Met386Leu missense variant moderate contig121 2833491

IGV: Start, Jump

A/T
NGS:
0.004
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.95_97delGTT p.Cys32del disruptive inframe deletion moderate contig121 2835800

IGV: Start, Jump

ATGT/A
NGS:
0.118
C90:
0.311
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
aPT1

UniProt

c.715G>C p.Ala239Pro missense variant moderate contig121 2841350

IGV: Start, Jump

G/C
NGS:
0.004
C90:
0.000
aPT1

UniProt

c.727G>T p.Glu243* stop gained high contig121 2841362

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.100
aPT1

UniProt

c.958G>A p.Gly320Ser missense variant moderate contig121 2842731

IGV: Start, Jump

G/A
NGS:
0.004
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.185 USO 31 (RSP10983)
  2. 0.194 Santhica27 (RSP10056)
  3. 0.196 Santhica 27 (RSP10665)
  4. 0.197 Lovrin (RSP10658)
  5. 0.199 USO 31 (RSP10981)
  6. 0.209 Carmagnola (RSP11037)
  7. 0.210 Monoica (RSP10241)
  8. 0.210 Carmagnola (RSP11039)
  9. 0.212 Carmagnola USO 31 (RSP11204)
  10. 0.212 Santhica27 (RSP11046)
  11. 0.214 USO31 (RSP10233)
  12. 0.215 Santhica27 (RSP11047)
  13. 0.215 Tisza (RSP10659)
  14. 0.216 Ivory (RSP10668)
  15. 0.217 Fedora 17 (RSP10661)
  16. 0.217 Tisza (RSP11045)
  17. 0.218 Carmagnola (RSP10982)
  18. 0.218 Futura 75 (RSP10664)
  19. 0.218 Tisza (RSP11044)
  20. 0.218 Carmagnola (RSP10980)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.188 Lovrin (RSP10658)
  2. 0.200 USO 31 (RSP10981)
  3. 0.203 Ivory (RSP10668)
  4. 0.208 Santhica27 (RSP11047)
  5. 0.210 Tisza (RSP11044)
  6. 0.212 Carmagnola (RSP11037)
  7. 0.213 Monoica (RSP10241)
  8. 0.215 Futura 75 (RSP10664)
  9. 0.215 Fedora 17 (RSP10661)
  10. 0.219 Tisza (RSP10659)
  11. 0.227 Tygra (RSP10667)
  12. 0.230 Carmagnola (RSP10979)
  13. 0.248 Feral (RSP10890)
  14. 0.248 KYRG-11 (RSP11051)
  15. 0.250 Kyrgyz Gold (RSP11054)
  16. 0.267 Jiangji (RSP10653)
  17. 0.299 Recon (RSP10755)
  18. 0.301 Kimbo Slice (RSP10997)
  19. 0.311 Hermaphrodite ResearchSample2 (RSP11050)
  20. 0.318 Liberty Haze (RSP11000)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.461 Cherry Blossom (RSP11318)
  2. 0.460 Cherry Blossom (RSP11312)
  3. 0.457 Cherry Blossom (RSP11323)
  4. 0.443 Cherry Blossom (RSP11300)
  5. 0.440 Cherry Blossom (RSP11311)
  6. 0.432 Cherry Blossom (RSP11331)
  7. 0.432 Cherry Blossom (RSP11298)
  8. 0.430 Cherry Blossom (RSP11308)
  9. 0.427 Cherry Blossom (RSP11335)
  10. 0.424 Cherry Blossom (RSP11334)
  11. 0.423 Unknown- Cherry Wine - 001 (RSP11268)
  12. 0.421 Cherry Blossom (RSP11302)
  13. 0.421 Cherry Blossom (RSP11299)
  14. 0.421 Cherry Blossom (RSP11319)
  15. 0.420 Cherry Blossom (RSP11325)
  16. 0.420 Cherry Blossom (RSP11315)
  17. 0.420 Cherry Blossom (RSP11301)
  18. 0.417 Cherry Blossom (RSP11316)
  19. 0.416 Wife (RSP11148)
  20. 0.415 Cherry Blossom (RSP11332)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.395 Cbot-2019-005 (RSP11133)
  2. 0.385 RKM-2018-002 (RSP11093)
  3. 0.376 RKM-2018-028 (RSP11120)
  4. 0.374 RKM-2018-022 (RSP11114)
  5. 0.373 RKM-2018-018 (RSP11110)
  6. 0.372 Skunk 18 (RSP11038)
  7. 0.371 Cherry (RSP11143)
  8. 0.370 RKM-2018-006 (RSP11097)
  9. 0.368 Cherry (RSP11142)
  10. 0.365 JL yellow (RSP11075)
  11. 0.365 Kush Hemp E1 (RSP11128)
  12. 0.364 RKM-2018-003 (RSP11094)
  13. 0.359 Hermaphrodite Research Sample1 (RSP11049)
  14. 0.358 RKM-2018-023 (RSP11115)
  15. 0.357 Golden Goat 2 (RSP10991)
  16. 0.356 Cbot-2019-004 (RSP11132)
  17. 0.355 Sour Raspberry (RSP10551)
  18. 0.355 RKM-2018-019 (RSP11111)
  19. 0.355 Cbot-2019-001 (RSP11129)
  20. 0.355 Blueberry Cheesecake (RSP10672)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448799
Overlapping SNPs:
118
Concordance:
78

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495209
Overlapping SNPs:
4
Concordance:
3

Blockchain Registration Information

Transaction ID
f2295c13f06f86a3e6c567b05c12d678098b5492cd8fe6a7f651df05ce91b1d5
Stamping Certificate
Download PDF (858.8 KB)
SHASUM Hash
9d2c031be1c221457af01243d7e392be6b6af8c7cf0f845736330768df0263df
QR code for RSP10235

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