Sour Raspberry

RSP 10551

Grower: Sun Simulator Farms

General Information

Sample Name
RD-1905-SR_06JAN2017
Accession Date
January 5, 2017
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

THC + THCA
14.94%
CBD + CBDA
0.057%
THCV + THCVA
0.061%
CBC + CBCA
0.194%
CBG + CBGA
0.28%
CBN + CBNA
0.091%

Terpenoids

α-Bisabolol
0.157%
Borneol
n/a
Camphene
n/a
Carene
n/a
Caryophyllene oxide
n/a
β-Caryophyllene
0.31%
Fenchol
0.278%
Geraniol
n/a
α-Humulene
0.213%
Limonene
n/a
Linalool
0.408%
Myrcene
0.165%
α-Phellandrene
n/a
Terpinolene
0.146%
α-Terpineol
n/a
α-Terpinene
n/a
γ-Terpinene
n/a
Total Nerolidol
0.443%
Total Ocimene
0.122%
α-Pinene
0.3%
β-Pinene
0.257%

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.16%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0661
male female RSP10551

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-5_1delATAATA p.Met1del start lost & conservative inframe deletion high contig700 1951880

IGV: Start, Jump

ATATTAT/A
NGS:
0.007
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.107 OG BSR (RSP12105)
  2. 0.206 Super Blue Dream (RSP11011)
  3. 0.212 Blue Dream (RSP11017)
  4. 0.218 Blue Dream (RSP11009)
  5. 0.220 Skunk#3 (RSP12639)
  6. 0.222 Hermaphrodite Research Sample1 (RSP11042)
  7. 0.223 Blue Dream (RSP11010)
  8. 0.226 Hermaphrodite Research Sample1 (RSP11049)
  9. 0.228 Blue Dream (RSP11006)
  10. 0.231 RKM-2018-010 (RSP11101)
  11. 0.234 RKM-2018-009 (RSP11100)
  12. 0.237 Blue Dream (RSP11342)
  13. 0.238 Blue Dream (RSP11007)
  14. 0.241 Serious Happiness (RSP10763)
  15. 0.242 Blue Dream (RSP11004)
  16. 0.243 Bordello (RSP11228)
  17. 0.244 Blue Dream (RSP11012)
  18. 0.245 Blue Dream (RSP11008)
  19. 0.247 RKM-2018-028 (RSP11120)
  20. 0.247 SHERBERT (RSP11355)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.226 RKM-2018-009 (RSP11100)
  2. 0.229 Hermaphrodite Research Sample1 (RSP11049)
  3. 0.246 RKM-2018-028 (RSP11120)
  4. 0.246 RKM-2018-033 (RSP11125)
  5. 0.249 RKM-2018-018 (RSP11110)
  6. 0.260 RKM-2018-004 (RSP11096)
  7. 0.263 Hermaphrodite ResearchSample2 (RSP11050)
  8. 0.264 Blue Dream (RSP11033)
  9. 0.270 Blueberry Cheesecake (RSP10684)
  10. 0.278 UP Sunrise (RSP10989)
  11. 0.287 RKM-2018-029 (RSP11121)
  12. 0.291 Golden Goat 2 (RSP10991)
  13. 0.292 Durban Poison (RSP11014)
  14. 0.292 Queen Jesus (RSP10105)
  15. 0.293 The Gift (RSP10988)
  16. 0.293 RKM-2018-032 (RSP11124)
  17. 0.295 CST (RSP11002)
  18. 0.296 Skunk#18 (RSP11038)
  19. 0.296 Blueberry Cheesecake (RSP10680)
  20. 0.297 RKM-2018-006 (RSP11097)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.472 Cherry Blossom (RSP11333)
  2. 0.468 Cherry Blossom (RSP11328)
  3. 0.467 Cherry Blossom (RSP11311)
  4. 0.455 Cherry Blossom (RSP11317)
  5. 0.454 Cherry Blossom (RSP11324)
  6. 0.453 Cherry Blossom (RSP11335)
  7. 0.449 Cherry Blossom (RSP11334)
  8. 0.447 Cherry Blossom (RSP11308)
  9. 0.446 Northern Skunk (RSP11456)
  10. 0.443 Cherry Blossom (RSP11312)
  11. 0.432 Cherry Blossom (RSP11314)
  12. 0.432 80E (RSP11211)
  13. 0.432 80E (RSP11213)
  14. 0.429 Cherry Blossom (RSP11300)
  15. 0.429 Cherry Blossom (RSP11309)
  16. 0.425 Cherry Blossom (RSP11330)
  17. 0.424 Cherry Blossom (RSP11302)
  18. 0.419 BagSeed (RSP12627)
  19. 0.413 80E (RSP11212)
  20. 0.408 Carmaleonte (RSP11207)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.404 Cbot-2019-005 (RSP11133)
  2. 0.378 Cherry (RSP11142)
  3. 0.377 Feral (RSP10890)
  4. 0.351 Kush Hemp E1 (RSP11128)
  5. 0.350 Monoica (RSP10241)
  6. 0.350 RKM-2018-022 (RSP11114)
  7. 0.349 Carmagnola (RSP11037)
  8. 0.347 Tisza (RSP11044)
  9. 0.347 Ivory (RSP10668)
  10. 0.344 RKM-2018-019 (RSP11111)
  11. 0.343 Cherry (RSP11143)
  12. 0.341 RKM-2018-027 (RSP11119)
  13. 0.338 USO 31 (RSP10981)
  14. 0.336 Lovrin (RSP10658)
  15. 0.332 Recon (RSP10755)
  16. 0.330 Blueberry Cheesecake (RSP10672)
  17. 0.330 KYRG-11 (RSP11051)
  18. 0.330 RKM-2018-026 (RSP11118)
  19. 0.328 Santhica27 (RSP11047)
  20. 0.328 RKM-2018-003 (RSP11094)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4450138
Overlapping SNPs:
7
Concordance:
5

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495226
Overlapping SNPs:
7
Concordance:
7

Blockchain Registration Information

Transaction ID
4abeffbe2bacaf3d307d96db200fd6418c1db4f060a7186635eb5a0d076cc936
Stamping Certificate
Download PDF (855.8 KB)
SHASUM Hash
ee2953acd06f8eee25289689dfddf2fbc23050db5dec3b1c7e678a6d5e44af7b
QR code for RSP10551

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