Advanced Strain Search

Sour Raspberry

RSP 10551

Grower: Sun Simulator Farms

General Information

Sample Name
RD-1905-SR_06JAN2017
Accession Date
January 5, 2017
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

THC + THCA
14.94%
CBD + CBDA
0.057%
THCV + THCVA
0.061%
CBC + CBCA
0.194%
CBG + CBGA
0.28%
CBN + CBNA
0.091%

Terpenoids

α-Bisabolol
0.157%
Borneol
n/a
Camphene
n/a
Carene
n/a
Caryophyllene oxide
n/a
β-Caryophyllene
0.31%
Fenchol
0.278%
Geraniol
n/a
α-Humulene
0.213%
Limonene
n/a
Linalool
0.408%
Myrcene
0.165%
α-Phellandrene
n/a
Terpinolene
0.146%
α-Terpineol
n/a
α-Terpinene
n/a
γ-Terpinene
n/a
Total Nerolidol
0.443%
Total Ocimene
0.122%
α-Pinene
0.3%
β-Pinene
0.257%

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.16%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0661
male female RSP10551

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-5_1delATAATA p.Met1del start lost & conservative inframe deletion high contig700 1951880

IGV: Start, Jump

ATATTAT/A
NGS:
0.007
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

clone distance sibling distance more distant
  1. 0.200 Hermaphrodite Research Sample1 (RSP11049)
  2. 0.204 Hermaphrodite Research Sample1 (RSP11042)
  3. 0.204 RKM-2018-010 (RSP11101)
  4. 0.214 RKM-2018-009 (RSP11100)
  5. 0.217 SHERBERT (RSP11355)
  6. 0.219 Bordello (RSP11228)
  7. 0.223 Super Blue Dream (RSP11011)
  8. 0.227 Blue Dream (RSP11342)
  9. 0.230 RKM-2018-028 (RSP11120)
  10. 0.232 Blue Dream (RSP11009)
  11. 0.236 Serious Happiness (RSP10763)
  12. 0.238 Blue Dream (RSP11010)
  13. 0.239 Blue Dream (RSP11017)
  14. 0.239 Green Crack (RSP11339)
  15. 0.242 RKM-2018-018 (RSP11110)
  16. 0.243 Garlic (RSP11341)
  17. 0.243 Blue Dream (RSP11008)
  18. 0.245 RKM-2018-033 (RSP11125)
  19. 0.246 Blue Dream (RSP11006)
  20. 0.247 RKM-2018-030 (RSP11122)

Nearest genetic relatives (Base Tree)

clone distance sibling distance more distant
  1. 0.203 Hermaphrodite Research Sample1 (RSP11049)
  2. 0.214 RKM-2018-009 (RSP11100)
  3. 0.232 RKM-2018-028 (RSP11120)
  4. 0.237 RKM-2018-018 (RSP11110)
  5. 0.249 RKM-2018-033 (RSP11125)
  6. 0.252 Blue Dream (RSP11033)
  7. 0.255 Hermaphrodite ResearchSample2 (RSP11050)
  8. 0.257 RKM-2018-029 (RSP11121)
  9. 0.258 Blueberry Cheesecake (RSP10680)
  10. 0.259 RKM-2018-005 (RSP11096)
  11. 0.266 The Gift (RSP10988)
  12. 0.268 RKM-2018-032 (RSP11124)
  13. 0.275 Italian Kiss (RSP11034)
  14. 0.280 Blueberry Cheesecake (RSP10684)
  15. 0.280 RKM-2018-006 (RSP11097)
  16. 0.281 RKM-2018-002 (RSP11093)
  17. 0.283 Golden Goat 2 (RSP10991)
  18. 0.283 Durban Poison (RSP11014)
  19. 0.284 Skywalker OG (RSP10837)
  20. 0.284 Pie Hoe (RSP11073)

Most genetically distant strains (All Samples)

clone distance sibling distance more distant
  1. 0.479 Cherry Blossom (RSP11333)
  2. 0.478 Cherry Blossom (RSP11311)
  3. 0.468 Cherry Blossom (RSP11328)
  4. 0.468 Cherry Blossom (RSP11324)
  5. 0.460 Cherry Blossom (RSP11317)
  6. 0.459 Cherry Blossom (RSP11314)
  7. 0.456 Cherry Blossom (RSP11335)
  8. 0.453 Cherry Blossom (RSP11308)
  9. 0.452 Cherry Blossom (RSP11334)
  10. 0.447 Cherry Blossom (RSP11300)
  11. 0.447 Cherry Blossom (RSP11312)
  12. 0.439 Cherry Blossom (RSP11309)
  13. 0.429 Cherry Blossom (RSP11302)
  14. 0.428 Cbot-2019-005 (RSP11133)
  15. 0.424 Cherry Blossom (RSP11330)
  16. 0.421 Cherry Blossom (RSP11298)
  17. 0.420 Cherry Blossom (RSP11318)
  18. 0.418 Cherry Blossom CBG (RSP11303)
  19. 0.417 Cherry Blossom (RSP11310)
  20. 0.415 Cherry Blossom (RSP11313)

Most genetically distant strains (Base Tree)

clone distance sibling distance more distant
  1. 0.428 Cbot-2019-005 (RSP11133)
  2. 0.376 Cherry (RSP11142)
  3. 0.363 Feral (RSP10890)
  4. 0.354 Monoica (RSP10241)
  5. 0.352 Carmagnola (RSP11037)
  6. 0.346 Kush Hemp E1 (RSP11128)
  7. 0.344 Santhica27 (RSP11047)
  8. 0.343 Cherry (RSP11143)
  9. 0.340 RKM-2018-019 (RSP11111)
  10. 0.334 RKM-2018-022 (RSP11114)
  11. 0.334 Futura 75 (RSP10664)
  12. 0.334 Tisza (RSP11044)
  13. 0.333 Tisza (RSP10659)
  14. 0.332 USO 31 (RSP10981)
  15. 0.328 Carmagnola (RSP10979)
  16. 0.327 Ivory (RSP10668)
  17. 0.324 Lovrin (RSP10658)
  18. 0.324 Cbot-2019-004 (RSP11132)
  19. 0.321 Tygra (RSP10667)
  20. 0.320 Blueberry Cheesecake (RSP10672)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4450138
Overlapping SNPs:
7
Concordance:
5

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495226
Overlapping SNPs:
7
Concordance:
7

Blockchain Registration Information

Transaction ID
4abeffbe2bacaf3d307d96db200fd6418c1db4f060a7186635eb5a0d076cc936
Stamping Certificate
Download PDF (855.8 KB)
SHASUM Hash
ee2953acd06f8eee25289689dfddf2fbc23050db5dec3b1c7e678a6d5e44af7b
QR code for RSP10551

Kannapedia uses cookies

By clicking Allow All, you agree to the storing of cookies on your device to enhance site navigation, analyze site usage, and assist in our marketing efforts.

Customize Settings