Jiangji

RSP 10653

Grower: CSU

General Information

Sample Name
Jiangji 5
Accession Date
February 14, 2017
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.37%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0465
male female RSP10653

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.995C>T p.Ser332Phe missense variant moderate contig700 1950643

IGV: Start, Jump

G/A
NGS:
0.042
C90:
0.000
aPT4

UniProt

c.470T>C p.Leu157Ser missense variant moderate contig121 2830665

IGV: Start, Jump

T/C
NGS:
0.007
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
aPT1

UniProt

c.727G>T p.Glu243* stop gained high contig121 2841362

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.100

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.207 KYRG-151 (RSP11052)
  2. 0.228 KYRG-21 (RSP11053)
  3. 0.231 Santhica 27 (RSP10665)
  4. 0.235 Kyrgyz Gold (RSP11054)
  5. 0.238 Carmagnola (RSP10982)
  6. 0.238 Tisza (RSP11045)
  7. 0.240 Tisza (RSP11044)
  8. 0.244 Tygra (RSP10667)
  9. 0.244 KYRG-11 (RSP11051)
  10. 0.249 USO31 (RSP10233)
  11. 0.254 Santhica27 (RSP11046)
  12. 0.254 Carmagnola (RSP11039)
  13. 0.254 Lovrin (RSP10658)
  14. 0.257 Santhica27 (RSP10056)
  15. 0.257 Santhica27 (RSP11047)
  16. 0.258 Diana (RSP10235)
  17. 0.259 Feral (RSP10892)
  18. 0.260 Fedora 17 (RSP10661)
  19. 0.261 Monoica (RSP10241)
  20. 0.263 Durban Poison 1 (RSP11013)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.239 Kyrgyz Gold (RSP11054)
  2. 0.251 KYRG-11 (RSP11051)
  3. 0.251 Tisza (RSP11044)
  4. 0.254 Lovrin (RSP10658)
  5. 0.258 Santhica27 (RSP11047)
  6. 0.258 Monoica (RSP10241)
  7. 0.260 Feral (RSP10890)
  8. 0.266 USO 31 (RSP10981)
  9. 0.269 Carmagnola (RSP11037)
  10. 0.269 Fedora 17 (RSP10661)
  11. 0.270 Tygra (RSP10667)
  12. 0.270 Tisza (RSP10659)
  13. 0.271 Futura 75 (RSP10664)
  14. 0.274 RKM-2018-029 (RSP11121)
  15. 0.275 Recon (RSP10755)
  16. 0.277 Carmagnola (RSP10979)
  17. 0.278 Hermaphrodite ResearchSample2 (RSP11050)
  18. 0.279 Kimbo Slice (RSP10997)
  19. 0.291 CST (RSP11002)
  20. 0.296 Ivory (RSP10668)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.464 Cherry Blossom (RSP11318)
  2. 0.453 Cherry Blossom (RSP11323)
  3. 0.421 Cherry Blossom (RSP11325)
  4. 0.414 Cherry Blossom (RSP11334)
  5. 0.414 Cherry Blossom (RSP11306)
  6. 0.414 Cherry Blossom (RSP11312)
  7. 0.411 Unknown- Cherry Wine - 001 (RSP11268)
  8. 0.411 Cherry Blossom (RSP11315)
  9. 0.409 Cherry Blossom (RSP11302)
  10. 0.408 Cherry Blossom (RSP11328)
  11. 0.406 Cherry Blossom (RSP11335)
  12. 0.403 Cherry Blossom (RSP11308)
  13. 0.403 Cherry Blossom (RSP11322)
  14. 0.402 Wife (RSP11148)
  15. 0.402 Cherry Blossom (RSP11298)
  16. 0.401 Cherry Blossom (RSP11326)
  17. 0.401 Cherry Blossom (RSP11310)
  18. 0.401 Cherry Blossom (RSP11301)
  19. 0.397 Chem 91 (RSP11185)
  20. 0.397 Cherry Blossom (RSP11333)

Most genetically distant strains (Base Tree)

0 0.092 0.183 0.275 0.367
clone distance sibling distance more distant
  1. 0.363 Kush Hemp E1 (RSP11128)
  2. 0.361 Cbot-2019-005 (RSP11133)
  3. 0.360 RKM-2018-028 (RSP11120)
  4. 0.355 RKM-2018-002 (RSP11093)
  5. 0.345 RKM-2018-003 (RSP11094)
  6. 0.345 Skunk 18 (RSP11038)
  7. 0.345 Cbot-2019-001 (RSP11129)
  8. 0.344 RKM-2018-032 (RSP11124)
  9. 0.344 RKM-2018-022 (RSP11114)
  10. 0.344 RKM-2018-018 (RSP11110)
  11. 0.342 RKM-2018-019 (RSP11111)
  12. 0.340 RKM-2018-023 (RSP11115)
  13. 0.338 Hermaphrodite Research Sample1 (RSP11049)
  14. 0.338 Italian Kiss (RSP11034)
  15. 0.337 RKM-2018-006 (RSP11097)
  16. 0.334 Blueberry Cheesecake (RSP10672)
  17. 0.334 Cherry (RSP11142)
  18. 0.333 Cherry (RSP11143)
  19. 0.333 Gold Cracker (RSP11048)
  20. 0.330 RKM-2018-020 (RSP11112)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4450122
Overlapping SNPs:
106
Concordance:
70

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495157
Overlapping SNPs:
7
Concordance:
6

Blockchain Registration Information

Transaction ID
781bab208fe41bbe36c649af26e9ca50b3ca7a29e9e31da272600e314d71e023
Stamping Certificate
Download PDF (863.3 KB)
SHASUM Hash
6430b6f0a09ffa0ff36515fc553ef979704002d9968b770f2305b092eeb35585
QR code for RSP10653

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