Jiangji

RSP 10653

Grower: CSU

General Information

Sample Name
Jiangji 5
Accession Date
February 14, 2017
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.37%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0465
male female RSP10653

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.995C>T p.Ser332Phe missense variant moderate contig700 1950643

IGV: Start, Jump

G/A
NGS:
0.042
C90:
0.000
aPT4

UniProt

c.470T>C p.Leu157Ser missense variant moderate contig121 2830665

IGV: Start, Jump

T/C
NGS:
0.007
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
aPT1

UniProt

c.727G>T p.Glu243* stop gained high contig121 2841362

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.100

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.232 KYRG-151 (RSP11052)
  2. 0.237 Tak-HN (RSP11618)
  3. 0.239 KYRG-11 (RSP11051)
  4. 0.239 SCN (SRR14708201)
  5. 0.239 Kyrgyz Gold (RSP11054)
  6. 0.240 YNN (SRR14708199)
  7. 0.240 QHI (SRR14708202)
  8. 0.243 R3in134 (SRR14708220)
  9. 0.243 IMA (SRR14708203)
  10. 0.244 R2in135 (SRR14708221)
  11. 0.245 R4 (RSP11617)
  12. 0.246 GXI (SRR14708198)
  13. 0.247 Santhica 27 (RSP10665)
  14. 0.248 Santhica27 (RSP10056)
  15. 0.248 IBR3 (SRR14708249)
  16. 0.249 R2 (RSP11615)
  17. 0.250 Harlox (RSP10641)
  18. 0.250 R3 (RSP11616)
  19. 0.250 Santhica27 (RSP11046)
  20. 0.251 IUL2 (SRR14708253)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.243 Kyrgyz Gold (RSP11054)
  2. 0.254 KYRG-11 (RSP11051)
  3. 0.262 Lovrin (RSP10658)
  4. 0.265 Tygra (RSP10667)
  5. 0.274 Tisza (RSP11044)
  6. 0.275 Tisza (RSP10659)
  7. 0.276 Santhica27 (RSP11047)
  8. 0.277 Liberty Haze (RSP11000)
  9. 0.284 Futura 75 (RSP10664)
  10. 0.286 Carmagnola (RSP10979)
  11. 0.289 Feral (RSP10890)
  12. 0.290 USO 31 (RSP10981)
  13. 0.290 Fedora 17 (RSP10661)
  14. 0.292 Carmagnola (RSP11037)
  15. 0.294 RKM-2018-029 (RSP11121)
  16. 0.294 Monoica (RSP10241)
  17. 0.299 UP Sunrise (RSP10989)
  18. 0.302 Recon (RSP10755)
  19. 0.304 Durban Poison (RSP11014)
  20. 0.306 Ivory (RSP10668)

Most genetically distant strains (All Samples)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.431 Chem 91 (RSP11185)
  2. 0.428 Cherry Blossom (RSP11318)
  3. 0.424 Cherry Blossom (RSP11323)
  4. 0.404 Cherry Blossom (RSP11301)
  5. 0.403 Cherry Blossom (RSP11325)
  6. 0.402 Cherry Blossom (RSP11312)
  7. 0.402 Cherry Blossom (RSP11322)
  8. 0.400 Chematonic -Cannatonic x Chemdawg- (RSP11394)
  9. 0.399 GG4 (RSP11978)
  10. 0.399 Cherry Blossom (RSP11306)
  11. 0.394 Cherry Blossom (RSP11298)
  12. 0.394 Cherry Blossom (RSP11300)
  13. 0.393 Cherry Blossom (RSP11315)
  14. 0.393 GMO x Garlic Breath (RSP12507)
  15. 0.389 New York City Deisel (RSP11225)
  16. 0.389 Escape Velocity (RSP11165)
  17. 0.387 Cherry Blossom (RSP11329)
  18. 0.387 Cherry Blossom (RSP11328)
  19. 0.387 Cherry Blossom (RSP11311)
  20. 0.386 Wife (RSP11148)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.375 Kush Hemp E1 (RSP11128)
  2. 0.375 RKM-2018-002 (RSP11093)
  3. 0.370 RKM-2018-028 (RSP11120)
  4. 0.367 JL yellow (RSP11075)
  5. 0.364 Cbot-2019-001 (RSP11129)
  6. 0.363 Skunk#18 (RSP11038)
  7. 0.361 Cbot-2019-005 (RSP11133)
  8. 0.359 Gold Cracker (RSP11048)
  9. 0.359 RKM-2018-003 (RSP11094)
  10. 0.356 Italian Kiss (RSP11034)
  11. 0.356 RKM-2018-023 (RSP11115)
  12. 0.354 Cherry (RSP11143)
  13. 0.354 RKM-2018-006 (RSP11097)
  14. 0.354 RKM-2018-018 (RSP11110)
  15. 0.353 RKM-2018-032 (RSP11124)
  16. 0.352 RKM-2018-009 (RSP11100)
  17. 0.348 RKM-2018-027 (RSP11119)
  18. 0.344 Cbot-2019-004 (RSP11132)
  19. 0.343 Hermaphrodite Research Sample1 (RSP11049)
  20. 0.341 Blueberry Cheesecake (RSP10680)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4450122
Overlapping SNPs:
106
Concordance:
70

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495157
Overlapping SNPs:
7
Concordance:
6

Blockchain Registration Information

Transaction ID
781bab208fe41bbe36c649af26e9ca50b3ca7a29e9e31da272600e314d71e023
Stamping Certificate
Download PDF (863.3 KB)
SHASUM Hash
6430b6f0a09ffa0ff36515fc553ef979704002d9968b770f2305b092eeb35585
QR code for RSP10653

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