Lovrin

RSP 10658

Grower: CSU

General Information

Sample Name
Lovrin 5
Accession Date
February 14, 2017
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.32%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0462
male female RSP10658

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
CBDAS c.221C>G p.Thr74Ser missense variant moderate contig1772 2082447

IGV: Start, Jump

C/G
NGS:
0.136
C90:
0.057

Variants (Select Genes of Interest)

PKSG-4b

UniProt

c.544G>T p.Gly182Trp missense variant moderate contig700 2721129

IGV: Start, Jump

C/A
NGS:
0.055
C90:
0.000
PKSG-4b

UniProt

c.541G>C p.Val181Leu missense variant moderate contig700 2721132

IGV: Start, Jump

C/G
NGS:
0.004
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
aPT1

UniProt

c.95_97delGTT p.Cys32del disruptive inframe deletion moderate contig121 2835800

IGV: Start, Jump

ATGT/A
NGS:
0.118
C90:
0.311
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
HDS-2

UniProt

c.679G>C p.Gly227Arg missense variant moderate contig95 1990632

IGV: Start, Jump

G/C
NGS:
0.037
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.143 USO 31 (RSP10983)
  2. 0.144 USO 31 (RSP10981)
  3. 0.170 USO31 (RSP10233)
  4. 0.183 Ivory (RSP10668)
  5. 0.185 Santhica 27 (RSP10665)
  6. 0.191 Santhica27 (RSP10056)
  7. 0.192 R1in136 (SRR14708226)
  8. 0.193 Santhica27 (RSP11047)
  9. 0.194 Juso14 (SRR14708259)
  10. 0.194 Santhica27 (RSP11046)
  11. 0.194 Diana (RSP10235)
  12. 0.197 Futura 75 (RSP10664)
  13. 0.197 Tygra (RSP10667)
  14. 0.198 Fedora 17 (SRR14708222)
  15. 0.198 Monoica (RSP10241)
  16. 0.199 Fedora 17 (RSP11203)
  17. 0.201 Beniko (SRR14708275)
  18. 0.203 Fedora 17 (RSP10661)
  19. 0.203 Santhica 27 (SRR14708211)
  20. 0.205 R1in136 (SRR14708227)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.143 USO 31 (RSP10981)
  2. 0.187 Ivory (RSP10668)
  3. 0.199 Futura 75 (RSP10664)
  4. 0.199 Fedora 17 (RSP10661)
  5. 0.199 Santhica27 (RSP11047)
  6. 0.202 Monoica (RSP10241)
  7. 0.204 Tygra (RSP10667)
  8. 0.205 Tisza (RSP10659)
  9. 0.230 Carmagnola (RSP11037)
  10. 0.237 Tisza (RSP11044)
  11. 0.238 Kyrgyz Gold (RSP11054)
  12. 0.241 KYRG-11 (RSP11051)
  13. 0.243 Carmagnola (RSP10979)
  14. 0.248 Feral (RSP10890)
  15. 0.262 Jiangji (RSP10653)
  16. 0.289 Liberty Haze (RSP11000)
  17. 0.306 Kimbo Slice (RSP10997)
  18. 0.309 Blueberry Cheesecake (RSP10684)
  19. 0.314 CST (RSP11002)
  20. 0.315 Recon (RSP10755)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.439 Cherry Blossom (RSP11312)
  2. 0.429 Cherry Blossom (RSP11298)
  3. 0.423 Cherry Blossom (RSP11323)
  4. 0.421 Super Sour Diesel (RSP11191)
  5. 0.421 BagSeed (RSP12627)
  6. 0.411 Cherry Blossom (RSP11328)
  7. 0.411 Cherry Blossom (RSP11318)
  8. 0.410 RKM-2018-002 (RSP11093)
  9. 0.409 Chem 91 (RSP11185)
  10. 0.409 BagSeed (RSP12501)
  11. 0.409 Cherry Blossom (RSP11311)
  12. 0.408 CHEM4 (RSP12090)
  13. 0.408 Cherry Blossom (RSP11300)
  14. 0.405 Cherry Blossom (RSP11331)
  15. 0.403 Danny Noonan (RSP11070)
  16. 0.403 Cherry Blossom (RSP11334)
  17. 0.402 Fatso (RSP11741)
  18. 0.402 Cherry Blossom (RSP11309)
  19. 0.400 Deadhead OG (RSP11463)
  20. 0.398 GG#4 (RSP11461)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.400 Cbot-2019-005 (RSP11133)
  2. 0.399 RKM-2018-002 (RSP11093)
  3. 0.371 JL yellow (RSP11075)
  4. 0.371 RKM-2018-032 (RSP11124)
  5. 0.365 Kush Hemp E1 (RSP11128)
  6. 0.365 RKM-2018-023 (RSP11115)
  7. 0.364 RKM-2018-028 (RSP11120)
  8. 0.361 RKM-2018-004 (RSP11096)
  9. 0.357 Cbot-2019-004 (RSP11132)
  10. 0.356 RKM-2018-022 (RSP11114)
  11. 0.355 Skunk#18 (RSP11038)
  12. 0.354 Hermaphrodite Research Sample1 (RSP11049)
  13. 0.352 RKM-2018-018 (RSP11110)
  14. 0.352 RKM-2018-019 (RSP11111)
  15. 0.351 Gold Cracker (RSP11048)
  16. 0.351 RKM-2018-003 (RSP11094)
  17. 0.350 RKM-2018-034 (RSP11126)
  18. 0.348 RKM-2018-027 (RSP11119)
  19. 0.345 Cbot-2019-001 (RSP11129)
  20. 0.343 RKM-2018-009 (RSP11100)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448781
Overlapping SNPs:
93
Concordance:
72

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495180
Overlapping SNPs:
6
Concordance:
5

Blockchain Registration Information

Transaction ID
9075cdf7d534d2fcacdb9066619a7d7668bffa39391e17f0f6fbcb126c9754a8
Stamping Certificate
Download PDF (860.2 KB)
SHASUM Hash
1629066679bf921e088d08f8f43038351cd80c9b2d0ae94c80ad8aab57fb925d
QR code for RSP10658

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