Advanced Strain Search

Lovrin

RSP 10658

Grower: CSU

General Information

Sample Name
Lovrin 5
Accession Date
February 14, 2017
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.32%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0462
male female RSP10658

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
CBDAS c.221C>G p.Thr74Ser missense variant moderate contig1772 2082447

IGV: Start, Jump

C/G
NGS:
0.136
C90:
0.057

Variants (Select Genes of Interest)
PKSG-4b

UniProt

c.544G>T p.Gly182Trp missense variant moderate contig700 2721129

IGV: Start, Jump

C/A
NGS:
0.055
C90:
0.000
PKSG-4b

UniProt

c.541G>C p.Val181Leu missense variant moderate contig700 2721132

IGV: Start, Jump

C/G
NGS:
0.004
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
aPT1

UniProt

c.95_97delGTT p.Cys32del disruptive inframe deletion moderate contig121 2835800

IGV: Start, Jump

ATGT/A
NGS:
0.118
C90:
0.311
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
HDS-2

UniProt

c.679G>C p.Gly227Arg missense variant moderate contig95 1990632

IGV: Start, Jump

G/C
NGS:
0.037
C90:
0.000

Nearest genetic relatives (All Samples)

clone distance sibling distance more distant
  1. 0.136 USO 31 (RSP10983)
  2. 0.141 USO 31 (RSP10981)
  3. 0.162 USO31 (RSP10233)
  4. 0.171 Ivory (RSP10668)
  5. 0.180 Futura 75 (RSP10664)
  6. 0.185 Santhica27 (RSP11047)
  7. 0.186 Fedora 17 (RSP11203)
  8. 0.186 Carmagnola USO 31 (RSP11204)
  9. 0.188 Santhica27 (RSP11046)
  10. 0.188 Fedora 17 (RSP10661)
  11. 0.189 Tygra (RSP10667)
  12. 0.189 Santhica27 (RSP10056)
  13. 0.189 Monoica (RSP10241)
  14. 0.196 Tisza (RSP10659)
  15. 0.197 Diana (RSP10235)
  16. 0.199 Santhica 27 (RSP10665)
  17. 0.201 Carmagnola (RSP10982)
  18. 0.204 KYRG-151 (RSP11052)
  19. 0.217 Carmagnola (RSP10977)
  20. 0.218 Carmagnola (RSP11039)

Nearest genetic relatives (Base Tree)

clone distance sibling distance more distant
  1. 0.140 USO 31 (RSP10981)
  2. 0.178 Ivory (RSP10668)
  3. 0.182 Santhica27 (RSP11047)
  4. 0.188 Futura 75 (RSP10664)
  5. 0.189 Monoica (RSP10241)
  6. 0.193 Fedora 17 (RSP10661)
  7. 0.199 Tygra (RSP10667)
  8. 0.200 Tisza (RSP10659)
  9. 0.220 Carmagnola (RSP11037)
  10. 0.229 Tisza (RSP11044)
  11. 0.239 Carmagnola (RSP10979)
  12. 0.242 Feral (RSP10890)
  13. 0.245 KYRG-11 (RSP11051)
  14. 0.245 Kyrgyz Gold (RSP11054)
  15. 0.254 Jiangji (RSP10653)
  16. 0.298 Recon (RSP10755)
  17. 0.299 RKM-2018-029 (RSP11121)
  18. 0.301 Liberty Haze (RSP11000)
  19. 0.304 Kimbo Slice (RSP10997)
  20. 0.306 CST (RSP11002)

Most genetically distant strains (All Samples)

clone distance sibling distance more distant
  1. 0.450 Cherry Blossom (RSP11323)
  2. 0.439 Cherry Blossom (RSP11298)
  3. 0.439 Cherry Blossom (RSP11312)
  4. 0.425 Cherry Blossom (RSP11311)
  5. 0.425 Cherry Blossom (RSP11334)
  6. 0.425 Cherry Blossom (RSP11318)
  7. 0.421 Cherry Blossom (RSP11328)
  8. 0.420 Cherry Blossom (RSP11331)
  9. 0.415 Cherry Blossom (RSP11300)
  10. 0.412 Unknown- Cherry Wine - 001 (RSP11268)
  11. 0.409 Cherry Blossom (RSP11309)
  12. 0.409 Cherry Blossom (RSP11316)
  13. 0.408 Cherry Blossom (RSP11306)
  14. 0.408 Unknown- Cherry Wine - 002 (RSP11269)
  15. 0.404 Cherry Blossom (RSP11314)
  16. 0.403 Cherry Blossom (RSP11329)
  17. 0.403 Cherry Blossom (RSP11301)
  18. 0.401 Cherry Blossom (RSP11299)
  19. 0.400 Unknown- Cherry Wine - 003 (RSP11270)
  20. 0.399 Cherry Blossom (RSP11308)

Most genetically distant strains (Base Tree)

clone distance sibling distance more distant
  1. 0.394 Cbot-2019-005 (RSP11133)
  2. 0.384 RKM-2018-002 (RSP11093)
  3. 0.363 JL yellow (RSP11075)
  4. 0.358 RKM-2018-028 (RSP11120)
  5. 0.357 RKM-2018-032 (RSP11124)
  6. 0.350 Skunk 18 (RSP11038)
  7. 0.349 Cbot-2019-004 (RSP11132)
  8. 0.349 RKM-2018-018 (RSP11110)
  9. 0.348 RKM-2018-022 (RSP11114)
  10. 0.348 RKM-2018-003 (RSP11094)
  11. 0.348 RKM-2018-023 (RSP11115)
  12. 0.347 Skywalker OG (RSP10837)
  13. 0.347 Hermaphrodite Research Sample1 (RSP11049)
  14. 0.347 Kush Hemp E1 (RSP11128)
  15. 0.346 Cbot-2019-001 (RSP11129)
  16. 0.345 RKM-2018-034 (RSP11126)
  17. 0.345 Cherry (RSP11143)
  18. 0.343 RKM-2018-020 (RSP11112)
  19. 0.342 Gold Cracker (RSP11048)
  20. 0.339 RKM-2018-005 (RSP11096)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448781
Overlapping SNPs:
93
Concordance:
72

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495180
Overlapping SNPs:
6
Concordance:
5

Blockchain Registration Information

Transaction ID
9075cdf7d534d2fcacdb9066619a7d7668bffa39391e17f0f6fbcb126c9754a8
Stamping Certificate
Download PDF (860.2 KB)
SHASUM Hash
1629066679bf921e088d08f8f43038351cd80c9b2d0ae94c80ad8aab57fb925d
QR code for RSP10658

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