Fedora 17
RSP 10661
Grower: CSU
General Information
- Sample Name
- Fedora 17 5
- Accession Date
- February 14, 2017
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.544G>T | p.Gly182Trp | missense variant | moderate | contig700 | 2721129 | C/A |
|
PKSG-4b | c.490delG | p.Glu164fs | frameshift variant | high | contig700 | 2721182 | TC/T |
|
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.489T>A | p.Phe163Leu | missense variant | moderate | contig700 | 2721184 | A/T |
|
aPT4 | c.517A>T | p.Ile173Leu | missense variant & splice region variant | moderate | contig121 | 2830795 | A/T |
|
aPT4 | c.757G>T | p.Val253Leu | missense variant | moderate | contig121 | 2831364 | G/T |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 |
c.95_97delGT |
p.Cys32del | disruptive inframe deletion | moderate | contig121 | 2835800 | ATGT/A | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
Nearest genetic relatives (All Samples)
- 0.168 Tygra (RSP10667)
- 0.172 USO 31 (RSP10983)
- 0.179 Santhica27 (RSP11046)
- 0.180 Santhica27 (RSP10056)
- 0.183 Santhica27 (RSP11047)
- 0.184 USO 31 (RSP10981)
- 0.185 Santhica 27 (RSP10665)
- 0.187 KYRG-151 (RSP11052)
- 0.188 Lovrin (RSP10658)
- 0.196 USO31 (RSP10233)
- 0.204 Fedora 17 (RSP11203)
- 0.204 Carmagnola USO 31 (RSP11204)
- 0.206 Futura 75 (RSP10664)
- 0.208 Monoica (RSP10241)
- 0.213 Tisza (RSP11045)
- 0.214 Ivory (RSP10668)
- 0.214 Carmagnola (RSP10982)
- 0.216 Tisza (RSP10659)
- 0.217 KYRG-21 (RSP11053)
- 0.217 Diana (RSP10235)
Nearest genetic relatives (Base Tree)
- 0.179 Santhica27 (RSP11047)
- 0.181 Tygra (RSP10667)
- 0.188 USO 31 (RSP10981)
- 0.193 Lovrin (RSP10658)
- 0.199 Monoica (RSP10241)
- 0.199 Futura 75 (RSP10664)
- 0.204 Ivory (RSP10668)
- 0.210 Tisza (RSP10659)
- 0.217 Tisza (RSP11044)
- 0.227 Kyrgyz Gold (RSP11054)
- 0.233 Carmagnola (RSP10979)
- 0.234 KYRG-11 (RSP11051)
- 0.234 Carmagnola (RSP11037)
- 0.243 Feral (RSP10890)
- 0.269 Jiangji (RSP10653)
- 0.290 Black Beauty (RSP11035)
- 0.290 Kimbo Slice (RSP10997)
- 0.297 Recon (RSP10755)
- 0.308 RKM-2018-029 (RSP11121)
- 0.308 Hermaphrodite ResearchSample2 (RSP11050)
Most genetically distant strains (All Samples)
- 0.451 Cherry Blossom (RSP11323)
- 0.446 Cherry Blossom (RSP11318)
- 0.439 Cherry Blossom (RSP11312)
- 0.433 Cherry Blossom (RSP11328)
- 0.430 Cherry Blossom (RSP11300)
- 0.423 Cherry Blossom (RSP11298)
- 0.422 Cherry Blossom (RSP11311)
- 0.421 Cherry Blossom (RSP11301)
- 0.419 Cherry Blossom (RSP11334)
- 0.415 Unknown- Cherry Wine - 001 (RSP11268)
- 0.414 Cherry Blossom (RSP11333)
- 0.414 Cherry Blossom (RSP11331)
- 0.413 Cherry Blossom (RSP11308)
- 0.411 Cherry Blossom (RSP11335)
- 0.411 Cherry Blossom (RSP11314)
- 0.410 Cherry Blossom (RSP11325)
- 0.409 Cherry Blossom (RSP11332)
- 0.409 Cherry Blossom (RSP11310)
- 0.406 Cherry Blossom (RSP11306)
- 0.406 Cherry Blossom (RSP11330)
Most genetically distant strains (Base Tree)
- 0.402 Cbot-2019-005 (RSP11133)
- 0.363 RKM-2018-002 (RSP11093)
- 0.360 Skunk 18 (RSP11038)
- 0.358 JL yellow (RSP11075)
- 0.353 Cherry (RSP11143)
- 0.352 RKM-2018-006 (RSP11097)
- 0.350 Kush Hemp E1 (RSP11128)
- 0.350 Blueberry Cheesecake (RSP10672)
- 0.350 RKM-2018-023 (RSP11115)
- 0.350 RKM-2018-028 (RSP11120)
- 0.349 Cbot-2019-004 (RSP11132)
- 0.348 Cbot-2019-001 (RSP11129)
- 0.347 RKM-2018-003 (RSP11094)
- 0.347 RKM-2018-018 (RSP11110)
- 0.343 Cherry (RSP11142)
- 0.342 RKM-2018-022 (RSP11114)
- 0.339 RKM-2018-032 (RSP11124)
- 0.338 Hermaphrodite Research Sample1 (RSP11049)
- 0.337 UP Sunrise (RSP10989)
- 0.336 RKM-2018-009 (RSP11100)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 110
- Concordance:
- 79
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 4
- Concordance:
- 3
Blockchain Registration Information
- Transaction ID
-
6f9d74c60a1862be
05b8f9f0a8b70f72 575731e425019ec7 22b9233521506212 - Stamping Certificate
- Download PDF (851.9 KB)
- SHASUM Hash
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10f724a99889959f
3d5afa9686013b4c 1aa8a51aabadb099 ae1ae8947df4ba13