Santhica 27

RSP 10665

Grower: CSU

General Information

Sample Name
Santhica 27 5
Accession Date
February 14, 2017
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type IV

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.29%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0500
male female RSP10665

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
aPT1

UniProt

c.95_97delGTT p.Cys32del disruptive inframe deletion moderate contig121 2835800

IGV: Start, Jump

ATGT/A
NGS:
0.118
C90:
0.311
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
clone distance sibling distance more distant
  1. 0.113 Santhica27 (RSP10056)
  2. 0.124 Santhica27 (RSP11046)
  3. 0.128 Santhica27 (RSP11047)
  4. 0.147 Santhica 27 (SRR14708211)
  5. 0.155 Beniko (SRR14708275)
  6. 0.156 USO31 (RSP10233)
  7. 0.163 Fedora 17 (RSP10661)
  8. 0.173 Fedora 17 (SRR14708222)
  9. 0.176 R1in136 (SRR14708237)
  10. 0.177 Juso14 (SRR14708259)
  11. 0.180 VIR 223 - Bernburgskaya Odnodomnaya - bm (SRR14708217)
  12. 0.182 USO 31 (RSP10983)
  13. 0.182 Ferimon 12 (SRR14708233)
  14. 0.184 Tygra (RSP10667)
  15. 0.185 R1in136 (SRR14708227)
  16. 0.185 Lovrin (RSP10658)
  17. 0.185 Bialobrzeskie (SRR14708244)
  18. 0.187 KYRG-151 (RSP11052)
  19. 0.187 R1in136 (SRR14708226)
  20. 0.188 Diana (RSP10235)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.137 Santhica27 (RSP11047)
  2. 0.189 Lovrin (RSP10658)
  3. 0.192 Fedora 17 (RSP10661)
  4. 0.194 Monoica (RSP10241)
  5. 0.198 Tygra (RSP10667)
  6. 0.199 Futura 75 (RSP10664)
  7. 0.202 USO 31 (RSP10981)
  8. 0.215 Tisza (RSP11044)
  9. 0.217 Carmagnola (RSP11037)
  10. 0.223 Tisza (RSP10659)
  11. 0.225 Carmagnola (RSP10979)
  12. 0.237 KYRG-11 (RSP11051)
  13. 0.249 Feral (RSP10890)
  14. 0.253 Ivory (RSP10668)
  15. 0.263 Jiangji (RSP10653)
  16. 0.265 Kyrgyz Gold (RSP11054)
  17. 0.288 Blueberry Cheesecake (RSP10684)
  18. 0.294 Liberty Haze (RSP11000)
  19. 0.304 CST (RSP11002)
  20. 0.305 RKM-2018-029 (RSP11121)

Most genetically distant strains (All Samples)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.432 Cherry Blossom (RSP11311)
  2. 0.419 Cherry Blossom (RSP11301)
  3. 0.415 Cherry Blossom (RSP11298)
  4. 0.410 Cherry Blossom (RSP11323)
  5. 0.407 Cherry Blossom (RSP11312)
  6. 0.406 Chem 91 (RSP11185)
  7. 0.404 Unknown--Cherry Wine---001- (RSP11268)
  8. 0.401 Cherry Blossom (RSP11318)
  9. 0.400 Cbot-2019-005 (RSP11133)
  10. 0.397 Cherry Blossom (RSP11334)
  11. 0.395 Fatso (RSP11741)
  12. 0.395 Cherry Blossom (RSP11328)
  13. 0.394 Escape Velocity (RSP11165)
  14. 0.393 JL x NSPM1 4 (RSP11482)
  15. 0.393 Danny Noonan (RSP11070)
  16. 0.393 Lemon Skunk (RSP11229)
  17. 0.392 Cherry Blossom (RSP11308)
  18. 0.392 Cherry Blossom (RSP11335)
  19. 0.390 Cherry Blossom (RSP11309)
  20. 0.389 AVIDEKEL 2 0 (RSP11174)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.393 Cbot-2019-005 (RSP11133)
  2. 0.382 RKM-2018-002 (RSP11093)
  3. 0.376 JL yellow (RSP11075)
  4. 0.364 RKM-2018-004 (RSP11096)
  5. 0.359 RKM-2018-018 (RSP11110)
  6. 0.357 Cbot-2019-001 (RSP11129)
  7. 0.357 Skywalker OG (RSP10837)
  8. 0.356 RKM-2018-032 (RSP11124)
  9. 0.355 RKM-2018-028 (RSP11120)
  10. 0.354 RKM-2018-020 (RSP11112)
  11. 0.353 RKM-2018-026 (RSP11118)
  12. 0.353 RKM-2018-034 (RSP11126)
  13. 0.351 Kush Hemp E1 (RSP11128)
  14. 0.351 RKM-2018-027 (RSP11119)
  15. 0.351 RKM-2018-023 (RSP11115)
  16. 0.349 Skunk#18 (RSP11038)
  17. 0.349 RKM-2018-022 (RSP11114)
  18. 0.347 Hermaphrodite Research Sample1 (RSP11049)
  19. 0.347 RKM-2018-006 (RSP11097)
  20. 0.345 RKM-2018-033 (RSP11125)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4450090
Overlapping SNPs:
81
Concordance:
57

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495160
Overlapping SNPs:
6
Concordance:
5

Blockchain Registration Information

Transaction ID
f36658c4e7ffc71d23f1d8981780a854d0d912381b56984b4bb60bd191b309d4
Stamping Certificate
Download PDF (857.6 KB)
SHASUM Hash
83baf8f04280f85b5bb2193e6ff646fb6aaa71d8e24a98c2e34c60e1122e9ab1
QR code for RSP10665

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