Tygra

RSP 10667

Grower: CSU

General Information

Sample Name
Tygra 5
Accession Date
February 14, 2017
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.2%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0477
male female RSP10667

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
CBDAS c.221C>G p.Thr74Ser missense variant moderate contig1772 2082447

IGV: Start, Jump

C/G
NGS:
0.136
C90:
0.057

Variants (Select Genes of Interest)

aPT1

UniProt

c.95_97delGTT p.Cys32del disruptive inframe deletion moderate contig121 2835800

IGV: Start, Jump

ATGT/A
NGS:
0.118
C90:
0.311
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
HDS-2

UniProt

c.679G>C p.Gly227Arg missense variant moderate contig95 1990632

IGV: Start, Jump

G/C
NGS:
0.037
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.165 Santhica27 (RSP10056)
  2. 0.168 Fedora 17 (RSP10661)
  3. 0.179 USO 31 (RSP10981)
  4. 0.179 Santhica27 (RSP11046)
  5. 0.184 Santhica27 (RSP11047)
  6. 0.186 USO 31 (RSP10983)
  7. 0.187 Tisza (RSP10659)
  8. 0.189 Lovrin (RSP10658)
  9. 0.189 USO31 (RSP10233)
  10. 0.190 Santhica 27 (RSP10665)
  11. 0.205 Futura 75 (RSP10664)
  12. 0.207 Carmagnola USO 31 (RSP11204)
  13. 0.209 Ivory (RSP10668)
  14. 0.209 Fedora 17 (RSP11203)
  15. 0.211 Carmagnola (RSP10976)
  16. 0.212 Tisza (RSP11045)
  17. 0.216 Kyrgyz Gold (RSP11054)
  18. 0.218 Carmagnola (RSP10982)
  19. 0.219 KYRG-151 (RSP11052)
  20. 0.220 Monoica (RSP10241)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.181 Fedora 17 (RSP10661)
  2. 0.182 USO 31 (RSP10981)
  3. 0.192 Santhica27 (RSP11047)
  4. 0.199 Lovrin (RSP10658)
  5. 0.202 Tisza (RSP10659)
  6. 0.204 Ivory (RSP10668)
  7. 0.205 Futura 75 (RSP10664)
  8. 0.216 Monoica (RSP10241)
  9. 0.218 Tisza (RSP11044)
  10. 0.228 Kyrgyz Gold (RSP11054)
  11. 0.232 Carmagnola (RSP11037)
  12. 0.237 Carmagnola (RSP10979)
  13. 0.240 KYRG-11 (RSP11051)
  14. 0.264 Feral (RSP10890)
  15. 0.268 Blueberry Cheesecake (RSP10684)
  16. 0.270 Jiangji (RSP10653)
  17. 0.272 Liberty Haze (RSP11000)
  18. 0.272 Golden Goat 2 (RSP10991)
  19. 0.273 Recon (RSP10755)
  20. 0.279 Hermaphrodite ResearchSample2 (RSP11050)

Most genetically distant strains (All Samples)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.418 Cherry Blossom (RSP11311)
  2. 0.415 Cherry Blossom (RSP11318)
  3. 0.405 Cherry Blossom (RSP11300)
  4. 0.405 Cherry Blossom (RSP11312)
  5. 0.391 Cherry Blossom (RSP11323)
  6. 0.391 Cbot-2019-005 (RSP11133)
  7. 0.386 Unknown- Cherry Wine - 001 (RSP11268)
  8. 0.383 Cherry Blossom (RSP11298)
  9. 0.382 Chem 91 (RSP11185)
  10. 0.381 Cherry Blossom (RSP11301)
  11. 0.378 Wife (RSP11148)
  12. 0.377 Cherry Blossom (RSP11328)
  13. 0.377 Super Sour Diesel (RSP11191)
  14. 0.376 Cherry Blossom (RSP11308)
  15. 0.375 Cherry Blossom (RSP11335)
  16. 0.374 Unknown- Cherry Wine - 002 (RSP11269)
  17. 0.372 Cherry Blossom (RSP11333)
  18. 0.372 Cherry Blossom (RSP11331)
  19. 0.371 Cherry Blossom (RSP11309)
  20. 0.370 Cherry Blossom (RSP11314)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.417 Cbot-2019-005 (RSP11133)
  2. 0.359 RKM-2018-002 (RSP11093)
  3. 0.354 Kush Hemp E1 (RSP11128)
  4. 0.348 RKM-2018-006 (RSP11097)
  5. 0.347 JL yellow (RSP11075)
  6. 0.347 RKM-2018-022 (RSP11114)
  7. 0.339 Cherry (RSP11142)
  8. 0.338 Cbot-2019-004 (RSP11132)
  9. 0.338 Cherry (RSP11143)
  10. 0.335 RKM-2018-026 (RSP11118)
  11. 0.332 RKM-2018-032 (RSP11124)
  12. 0.331 RKM-2018-023 (RSP11115)
  13. 0.328 Cbot-2019-001 (RSP11129)
  14. 0.328 RKM-2018-028 (RSP11120)
  15. 0.327 RKM-2018-018 (RSP11110)
  16. 0.327 RKM-2018-019 (RSP11111)
  17. 0.326 RKM-2018-003 (RSP11094)
  18. 0.325 RKM-2018-005 (RSP11096)
  19. 0.324 Hermaphrodite Research Sample1 (RSP11049)
  20. 0.323 The Gift (RSP10988)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448806
Overlapping SNPs:
62
Concordance:
42

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495303
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
19d6f6fc9fa6447ffaaf448fd5b1a84fd78f223f942f15a7aaa80a37ddd7a210
Stamping Certificate
Download PDF (847.6 KB)
SHASUM Hash
d4f8ee0865a4c02b1c3503e8087995d4627e80a3b0e6c855896dc5afc00f3afb
QR code for RSP10667

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