Ivory

RSP 10668

Grower: CSU

General Information

Sample Name
Ivory 5
Accession Date
February 14, 2017
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.13%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0471
male female RSP10668

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

aPT1

UniProt

c.95_97delGTT p.Cys32del disruptive inframe deletion moderate contig121 2835800

IGV: Start, Jump

ATGT/A
NGS:
0.118
C90:
0.311
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
HDS-2

UniProt

c.679G>C p.Gly227Arg missense variant moderate contig95 1990632

IGV: Start, Jump

G/C
NGS:
0.037
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.171 Lovrin (RSP10658)
  2. 0.189 USO 31 (RSP10983)
  3. 0.201 Futura 75 (RSP10664)
  4. 0.207 Carmagnola USO 31 (RSP11204)
  5. 0.208 Santhica27 (RSP10056)
  6. 0.209 Tygra (RSP10667)
  7. 0.213 USO31 (RSP10233)
  8. 0.213 USO 31 (RSP10981)
  9. 0.214 Fedora 17 (RSP10661)
  10. 0.215 Santhica27 (RSP11046)
  11. 0.216 Carmagnola (RSP10976)
  12. 0.216 Diana (RSP10235)
  13. 0.217 Santhica 27 (RSP10665)
  14. 0.219 Monoica (RSP10241)
  15. 0.219 Carmagnola (RSP10982)
  16. 0.220 Santhica27 (RSP11047)
  17. 0.224 Carmagnola (RSP10978)
  18. 0.226 Carmagnola (RSP10979)
  19. 0.228 Tisza (RSP10659)
  20. 0.233 Carmagnola (RSP11202)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.178 Lovrin (RSP10658)
  2. 0.204 Futura 75 (RSP10664)
  3. 0.204 Fedora 17 (RSP10661)
  4. 0.204 Tygra (RSP10667)
  5. 0.204 USO 31 (RSP10981)
  6. 0.213 Santhica27 (RSP11047)
  7. 0.218 Monoica (RSP10241)
  8. 0.224 Carmagnola (RSP10979)
  9. 0.227 Tisza (RSP10659)
  10. 0.237 Carmagnola (RSP11037)
  11. 0.249 Feral (RSP10890)
  12. 0.255 Tisza (RSP11044)
  13. 0.259 Kyrgyz Gold (RSP11054)
  14. 0.266 KYRG-11 (RSP11051)
  15. 0.296 Jiangji (RSP10653)
  16. 0.298 Kimbo Slice (RSP10997)
  17. 0.306 RKM-2018-029 (RSP11121)
  18. 0.317 Liberty Haze (RSP11000)
  19. 0.318 Hermaphrodite ResearchSample2 (RSP11050)
  20. 0.320 Recon (RSP10755)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.456 Cherry Blossom (RSP11312)
  2. 0.451 Cherry Blossom (RSP11300)
  3. 0.435 Cherry Blossom (RSP11316)
  4. 0.429 Cherry Blossom (RSP11309)
  5. 0.427 Cherry Blossom (RSP11318)
  6. 0.426 Cherry Blossom (RSP11308)
  7. 0.426 Cherry Blossom (RSP11314)
  8. 0.425 Avidekel (RSP10938)
  9. 0.425 Cherry Blossom (RSP11298)
  10. 0.425 Cherry Blossom (RSP11335)
  11. 0.425 Cherry Blossom (RSP11328)
  12. 0.425 Cherry Blossom (RSP11311)
  13. 0.425 Cherry Blossom (RSP11331)
  14. 0.423 Cherry Blossom (RSP11319)
  15. 0.421 Cherry Blossom (RSP11332)
  16. 0.418 Cherry Blossom (RSP11333)
  17. 0.416 Cherry Blossom (RSP11299)
  18. 0.415 Cherry Blossom (RSP11334)
  19. 0.415 Unknown- Cherry Wine - 002 (RSP11269)
  20. 0.414 Cherry Blossom (RSP11324)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.397 Cbot-2019-005 (RSP11133)
  2. 0.386 RKM-2018-002 (RSP11093)
  3. 0.373 RKM-2018-018 (RSP11110)
  4. 0.369 RKM-2018-022 (RSP11114)
  5. 0.368 RKM-2018-028 (RSP11120)
  6. 0.366 RKM-2018-023 (RSP11115)
  7. 0.364 Cherry (RSP11142)
  8. 0.362 Blueberry Cheesecake (RSP10684)
  9. 0.361 Golden Goat 2 (RSP10991)
  10. 0.361 Skunk 18 (RSP11038)
  11. 0.360 RKM-2018-003 (RSP11094)
  12. 0.358 Cbot-2019-004 (RSP11132)
  13. 0.354 Gold Cracker (RSP11048)
  14. 0.353 Kush Hemp E1 (RSP11128)
  15. 0.352 RKM-2018-032 (RSP11124)
  16. 0.352 RKM-2018-006 (RSP11097)
  17. 0.350 Cherry (RSP11143)
  18. 0.349 RKM-2018-027 (RSP11119)
  19. 0.348 Hermaphrodite Research Sample1 (RSP11049)
  20. 0.348 Black Beauty (RSP11035)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448674
Overlapping SNPs:
89
Concordance:
81

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495321
Overlapping SNPs:
14
Concordance:
9

Blockchain Registration Information

Transaction ID
8932650d4825bbc824b1e1f99da60b6b0bda796fb8148b4f844f4b6056efeae2
Stamping Certificate
Download PDF (855.9 KB)
SHASUM Hash
10098bffde1cc2df2b025bd3f7a99a7806614d2402d9cf75041705985cecac7a
QR code for RSP10668

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