Advanced Strain Search

Blueberry Cheesecake

RSP 10672

Grower: NA

General Information

Sample Name
Blueberry Cheesecake #1 Mother _23JAN2017
Accession Date
February 14, 2017
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type II

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0384
male female RSP10672

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.492G>C p.Glu164Asp missense variant moderate contig700 2721181

IGV: Start, Jump

C/G
NGS:
0.048
C90:
0.000
DXR-1

UniProt

c.139A>G p.Arg47Gly missense variant moderate contig380 235296

IGV: Start, Jump

T/C
NGS:
0.020
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000

Nearest genetic relatives (All Samples)

clone distance sibling distance more distant
  1. 0.002 Blueberry Cheesecake (RSP10671)
  2. 0.002 Blueberry Cheesecake (RSP10670)
  3. 0.034 JL 2 (RSP11076)
  4. 0.168 BlueBerry Cheesecake x JL Male (RSP11201)
  5. 0.234 Blueberry Cheesecake (RSP10684)
  6. 0.237 RKM-2018-031 (RSP11123)
  7. 0.244 Serious Happiness (RSP10763)
  8. 0.251 Blue Dream (RSP11004)
  9. 0.255 Durban Poison 1 (RSP10996)
  10. 0.258 Green Crack (RSP11339)
  11. 0.258 CST (RSP11002)
  12. 0.258 Black Jack (RSP10603)
  13. 0.259 BLACK JACK (RSP11346)
  14. 0.260 Durban Poison (RSP11014)
  15. 0.264 Durban Poison 1 (RSP11013)
  16. 0.265 Domnesia (RSP11184)
  17. 0.266 SHERBERT (RSP11355)
  18. 0.267 CANNATONIC (RSP11349)
  19. 0.267 JL 4th Gen 7 (RSP11153)
  20. 0.268 Cheese (RSP10460)

Nearest genetic relatives (Base Tree)

clone distance sibling distance more distant
  1. 0.243 Blueberry Cheesecake (RSP10684)
  2. 0.253 RKM-2018-031 (RSP11123)
  3. 0.271 CST (RSP11002)
  4. 0.274 Durban Poison (RSP11014)
  5. 0.277 QUEEN JESUS (RSP10105)
  6. 0.283 RKM-2018-003 (RSP11094)
  7. 0.286 Liberty Haze (RSP11000)
  8. 0.287 RKM-2018-029 (RSP11121)
  9. 0.289 Cherry (RSP11143)
  10. 0.291 UP Sunrise (RSP10989)
  11. 0.292 RKM-2018-027 (RSP11119)
  12. 0.295 RKM-2018-005 (RSP11096)
  13. 0.300 RKM-2018-019 (RSP11111)
  14. 0.303 KYRG-11 (RSP11051)
  15. 0.303 Cbot-2019-001 (RSP11129)
  16. 0.308 RKM-2018-020 (RSP11112)
  17. 0.310 RKM-2018-023 (RSP11115)
  18. 0.312 Tisza (RSP10659)
  19. 0.315 Golden Goat 2 (RSP10991)
  20. 0.316 Gold Cracker (RSP11048)

Most genetically distant strains (All Samples)

clone distance sibling distance more distant
  1. 0.442 Cherry Blossom (RSP11333)
  2. 0.435 Cherry Blossom CBG (RSP11303)
  3. 0.432 Cherry Blossom (RSP11328)
  4. 0.430 Cherry Blossom (RSP11324)
  5. 0.428 Cherry Blossom (RSP11317)
  6. 0.427 Cherry Blossom (RSP11314)
  7. 0.426 Cherry Blossom (RSP11323)
  8. 0.424 Cherry Blossom (RSP11334)
  9. 0.417 80E (RSP11213)
  10. 0.413 Cherry Blossom (RSP11301)
  11. 0.408 Cherry Blossom (RSP11306)
  12. 0.404 Cherry Blossom (RSP11309)
  13. 0.400 Cherry Blossom (RSP11311)
  14. 0.396 Cherry Blossom (RSP11329)
  15. 0.393 Cherry Blossom (RSP11325)
  16. 0.392 Feral (RSP11205)
  17. 0.392 80E (RSP11212)
  18. 0.391 CS (RSP11208)
  19. 0.391 Cherry Blossom (RSP11313)
  20. 0.390 80E (RSP11211)

Most genetically distant strains (Base Tree)

clone distance sibling distance more distant
  1. 0.406 Cbot-2019-005 (RSP11133)
  2. 0.380 Kush Hemp E1 (RSP11128)
  3. 0.370 RKM-2018-026 (RSP11118)
  4. 0.370 Carmagnola (RSP10979)
  5. 0.367 Feral (RSP10890)
  6. 0.361 Carmagnola (RSP11037)
  7. 0.359 The Gift (RSP10988)
  8. 0.358 RKM-2018-028 (RSP11120)
  9. 0.356 Santhica27 (RSP11047)
  10. 0.356 Skywalker OG (RSP10837)
  11. 0.352 Kimbo Slice (RSP10997)
  12. 0.351 Skunk 18 (RSP11038)
  13. 0.351 JL yellow (RSP11075)
  14. 0.350 Fedora 17 (RSP10661)
  15. 0.347 Hermaphrodite Research Sample1 (RSP11049)
  16. 0.345 Recon (RSP10755)
  17. 0.343 Ivory (RSP10668)
  18. 0.342 RKM-2018-006 (RSP11097)
  19. 0.341 Pie Hoe (RSP11073)
  20. 0.340 Monoica (RSP10241)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347130
Overlapping SNPs:
107
Concordance:
74

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495291
Overlapping SNPs:
13
Concordance:
9

Blockchain Registration Information

Transaction ID
9f79a6a0a89da5360a01fb88736ece75c4fddb5e9fe0aa0534b8885ee905d057
Stamping Certificate
Download PDF (871.7 KB)
SHASUM Hash
15600341991afa3a5ff82c49c58706b0badd0c661fa8f8fe6ffbca0f4fcc95c5
QR code for RSP10672

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