Blueberry Cheesecake

RSP 10672

Grower: NA

General Information

Sample Name
Blueberry Cheesecake #1 Mother _23JAN2017
Accession Date
February 14, 2017
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type II

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0384
male female RSP10672

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.492G>C p.Glu164Asp missense variant moderate contig700 2721181

IGV: Start, Jump

C/G
NGS:
0.048
C90:
0.000
DXR-1

UniProt

c.139A>G p.Arg47Gly missense variant moderate contig380 235296

IGV: Start, Jump

T/C
NGS:
0.020
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.002 Blueberry Cheesecake (RSP10670)
  2. 0.005 Blueberry Cheesecake (RSP10671)
  3. 0.040 JL#2 (RSP11076)
  4. 0.175 BlueBerry Cheesecake x JL Male (RSP11201)
  5. 0.206 Blueberry Cheesecake (RSP10646)
  6. 0.228 Harlox (RSP10641)
  7. 0.230 Joy (RSP11380)
  8. 0.235 Electra (RSP11366)
  9. 0.236 Blueberry Cheesecake (RSP10684)
  10. 0.237 Durban Poison (RSP11014)
  11. 0.240 Lift (RSP11378)
  12. 0.241 RKM-2018-031 (RSP11123)
  13. 0.244 JL Compost (RSP11657)
  14. 0.246 CST (RSP11002)
  15. 0.249 Durban Poison #1 (RSP11013)
  16. 0.251 Badger (RSP11614)
  17. 0.252 SPQ -quite resistant- (RSP11370)
  18. 0.253 Serious Happiness (RSP10763)
  19. 0.254 Suver Haze (RSP11364)
  20. 0.263 Lifter (RSP11365)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.223 Blueberry Cheesecake (RSP10684)
  2. 0.236 RKM-2018-031 (RSP11123)
  3. 0.237 Durban Poison (RSP11014)
  4. 0.256 Liberty Haze (RSP11000)
  5. 0.262 CST (RSP11002)
  6. 0.265 UP Sunrise (RSP10989)
  7. 0.266 Queen Jesus (RSP10105)
  8. 0.280 Cherry (RSP11143)
  9. 0.284 RKM-2018-003 (RSP11094)
  10. 0.284 RKM-2018-027 (RSP11119)
  11. 0.288 RKM-2018-029 (RSP11121)
  12. 0.292 Tisza (RSP10659)
  13. 0.294 Cbot-2019-001 (RSP11129)
  14. 0.296 RKM-2018-004 (RSP11096)
  15. 0.300 RKM-2018-020 (RSP11112)
  16. 0.306 Italian Kiss (RSP11034)
  17. 0.308 Blue Dream (RSP11033)
  18. 0.312 RKM-2018-019 (RSP11111)
  19. 0.313 Golden Goat 2 (RSP10991)
  20. 0.318 KYRG-11 (RSP11051)

Most genetically distant strains (All Samples)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.420 Big Bud (SRR14708270)
  2. 0.410 Cherry Blossom (RSP11323)
  3. 0.408 BagSeed (RSP12627)
  4. 0.407 80E (RSP11213)
  5. 0.407 Cherry Blossom (RSP11333)
  6. 0.406 Cherry Blossom (RSP11328)
  7. 0.402 Cherry Blossom CBG (RSP11303)
  8. 0.401 Feral (RSP11205)
  9. 0.398 RKM-2018-026 (RSP11118)
  10. 0.398 Cherry Blossom (RSP11317)
  11. 0.396 BagSeed (RSP12501)
  12. 0.396 Cherry Blossom (RSP11314)
  13. 0.395 R1in136 (SRR14708226)
  14. 0.394 Red Eye OG (RSP11190)
  15. 0.393 Kush Hemp E1 (RSP11128)
  16. 0.393 Cherry Blossom (RSP11309)
  17. 0.390 CS (RSP11208)
  18. 0.390 GG4 (RSP11978)
  19. 0.390 Cherry Blossom (RSP11301)
  20. 0.389 Fatso (RSP11741)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.400 Kush Hemp E1 (RSP11128)
  2. 0.391 RKM-2018-026 (RSP11118)
  3. 0.385 Cbot-2019-005 (RSP11133)
  4. 0.383 Feral (RSP10890)
  5. 0.377 The Gift (RSP10988)
  6. 0.369 JL yellow (RSP11075)
  7. 0.361 Skywalker OG (RSP10837)
  8. 0.360 RKM-2018-028 (RSP11120)
  9. 0.359 Fedora 17 (RSP10661)
  10. 0.358 RKM-2018-034 (RSP11126)
  11. 0.358 Pie Hoe (RSP11073)
  12. 0.357 Carmagnola (RSP10979)
  13. 0.356 Carmagnola (RSP11037)
  14. 0.356 Black Beauty (RSP11035)
  15. 0.354 Kimbo Slice (RSP10997)
  16. 0.353 Recon (RSP10755)
  17. 0.353 RKM-2018-018 (RSP11110)
  18. 0.352 Skunk#18 (RSP11038)
  19. 0.352 RKM-2018-022 (RSP11114)
  20. 0.351 Hermaphrodite Research Sample1 (RSP11049)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347130
Overlapping SNPs:
107
Concordance:
74

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495291
Overlapping SNPs:
13
Concordance:
9

Blockchain Registration Information

Transaction ID
9f79a6a0a89da5360a01fb88736ece75c4fddb5e9fe0aa0534b8885ee905d057
Stamping Certificate
Download PDF (871.7 KB)
SHASUM Hash
15600341991afa3a5ff82c49c58706b0badd0c661fa8f8fe6ffbca0f4fcc95c5
QR code for RSP10672

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